Information for 11-TGAAATATGA (Motif 13)

C G A T C T A G C T G A C G T A G T C A C G A T T C G A C A G T A C T G C T G A
Reverse Opposite:
G A C T A G T C G T C A A G C T C G T A C A G T C G A T A G C T G A T C G C T A
p-value:1e-11
log p-value:-2.749e+01
Information Content per bp:1.837
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif2.89%
Number of Background Sequences with motif448.7
Percentage of Background Sequences with motif0.94%
Average Position of motif in Targets97.5 +/- 49.9bp
Average Position of motif in Background102.7 +/- 60.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TGAAATATGA---
-GWAAYHTGABMC
 C G A T C T A G C T G A C G T A G T C A C G A T T C G A C A G T A C T G C T G A A C G T A C G T A C G T
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TGAAATATGA-----
TGWAAYCTGABACCB
 C G A T C T A G C T G A C G T A G T C A C G A T T C G A C A G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T
C A G T A C T G C G T A G T C A C G T A A G C T G A T C A G C T A C T G C G T A A G T C G T C A A G T C A G T C A T C G

SIX2/MA1119.1/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TGAAATATGA---
AACTGAAACCTGATAC
 A C G T A C G T A C G T C G A T C T A G C T G A C G T A G T C A C G A T T C G A C A G T A C T G C T G A A C G T A C G T A C G T
G C T A G C T A T G A C C G A T C A T G G C T A G T C A C T G A G A T C G T A C G C A T C T A G C G T A A C G T G T C A G A T C

PB0176.1_Sox5_2/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGAAATATGA--
NNCTNAATTATGANN
 A C G T A C G T A C G T C G A T C T A G C T G A C G T A G T C A C G A T T C G A C A G T A C T G C T G A A C G T A C G T
G A C T G A T C A T G C A C G T G C A T C T G A C G T A C G A T A C G T G T C A G A C T T C A G G C T A C G A T G C T A

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGAAATATGA---
-GWAAYHTGAKMC
 C G A T C T A G C T G A C G T A G T C A C G A T T C G A C A G T A C T G C T G A A C G T A C G T A C G T
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

PB0106.1_Arid5a_2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TGAAATATGA-----
CATACAATACGAAATAA
 A C G T A C G T C G A T C T A G C T G A C G T A G T C A C G A T T C G A C A G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGAAATATGA--
TGAATTATGCAT
 C G A T C T A G C T G A C G T A G T C A C G A T T C G A C A G T A C T G C T G A A C G T A C G T
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

NEUROG2/MA0669.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGAAATATGA-
-GACATATGTT
 C G A T C T A G C T G A C G T A G T C A C G A T T C G A C A G T A C T G C T G A A C G T
A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T

Arid5a/MA0602.1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGAAATATGA-
NNTNNCAATATTAG
 A C G T A C G T A C G T C G A T C T A G C T G A C G T A G T C A C G A T T C G A C A G T A C T G C T G A A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGAAATATGA-
NNTNNCAATATTAG
 A C G T A C G T A C G T C G A T C T A G C T G A C G T A G T C A C G A T T C G A C A G T A C T G C T G A A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G