Information for 5-TTGCCAVA (Motif 4)

A G C T A C G T A T C G A T G C G T A C G C T A T C G A G T C A
Reverse Opposite:
C A G T A G C T C G A T C A T G A T C G T A G C G T C A T C G A
p-value:1e-34
log p-value:-7.945e+01
Information Content per bp:1.647
Number of Target Sequences with motif886.0
Percentage of Target Sequences with motif46.56%
Number of Background Sequences with motif15644.7
Percentage of Background Sequences with motif32.89%
Average Position of motif in Targets100.3 +/- 54.4bp
Average Position of motif in Background99.7 +/- 62.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.35
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCAVA
CTTGGCAA-
 A C G T A G C T A C G T A T C G A T G C G T A C G C T A T C G A G T C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--TTGCCAVA
NNTTGGCANN
 A C G T A C G T A G C T A C G T A T C G A T G C G T A C G C T A T C G A G T C A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCAVA
NTTGGCANN
 A C G T A G C T A C G T A T C G A T G C G T A C G C T A T C G A G T C A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---TTGCCAVA
TACTTGGCAGA
 A C G T A C G T A C G T A G C T A C G T A T C G A T G C G T A C G C T A T C G A G T C A
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:5
Score:0.77
Offset:1
Orientation:forward strand
Alignment:TTGCCAVA-
-TGCCAGCB
 A G C T A C G T A T C G A T G C G T A C G C T A T C G A G T C A A C G T
A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

RBPJ/MA1116.1/Jaspar

Match Rank:6
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--TTGCCAVA
NNTTCCCANN
 A C G T A C G T A G C T A C G T A T C G A T G C G T A C G C T A T C G A G T C A
A T G C A C G T C A G T G C A T T G A C T G A C A G T C C T G A A T C G T C A G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TTGCCAVA
HTTTCCCASG
 A C G T A C G T A G C T A C G T A T C G A T G C G T A C G C T A T C G A G T C A
G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTGCCAVA
GGTTGGCAT-
 A C G T A C G T A G C T A C G T A T C G A T G C G T A C G C T A T C G A G T C A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TTGCCAVA--
TTGCAACATN
 A G C T A C G T A T C G A T G C G T A C G C T A T C G A G T C A A C G T A C G T
C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TTGCCAVA-
-TGTCANYT
 A G C T A C G T A T C G A T G C G T A C G C T A T C G A G T C A A C G T
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T