Motif 29

Information for 24-GCCCAGCTCCCA (Motif 29)

Reverse Opposite:

p-value:	1e-2
log p-value:	-5.593e+00
Information Content per bp:	1.530
Number of Target Sequences with motif	2.0
Percentage of Target Sequences with motif	0.10%
Number of Background Sequences with motif	2.4
Percentage of Background Sequences with motif	0.01%
Average Position of motif in Targets	119.0 +/- 19.5bp
Average Position of motif in Background	90.0 +/- 45.1bp
Strand Bias (log2 ratio + to - strand density)	-2.3
Multiplicity (# of sites on avg that occur together)	3.00
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

Sp1(Zf)/Promoter/Homer

Match Rank:	1
Score:	0.66
Offset:	-1
Orientation:	forward strand
Alignment:	-GCCCAGCTCCCA GGCCCCGCCCCC-

POL013.1_MED-1/Jaspar

Match Rank:	2
Score:	0.64
Offset:	5
Orientation:	forward strand
Alignment:	GCCCAGCTCCCA -----GCTCCG-

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:	3
Score:	0.62
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCCCAGCTCCCA TGCCCAGNHW---

Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer

Match Rank:	4
Score:	0.62
Offset:	1
Orientation:	forward strand
Alignment:	GCCCAGCTCCCA- -CCCCTCCCCCAC

ASCL1/MA1100.1/Jaspar

Match Rank:	5
Score:	0.60
Offset:	0
Orientation:	reverse strand
Alignment:	GCCCAGCTCCCA- NNCCAGCTGCTNN

SP1/MA0079.3/Jaspar

Match Rank:	6
Score:	0.58
Offset:	0
Orientation:	forward strand
Alignment:	GCCCAGCTCCCA GCCCCGCCCCC-

NHLH1/MA0048.2/Jaspar

Match Rank:	7
Score:	0.58
Offset:	1
Orientation:	forward strand
Alignment:	GCCCAGCTCCCA -CGCAGCTGCG-

Myog/MA0500.1/Jaspar

Match Rank:	8
Score:	0.57
Offset:	0
Orientation:	reverse strand
Alignment:	GCCCAGCTCCCA NNGCAGCTGTC-

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:	9
Score:	0.56
Offset:	1
Orientation:	forward strand
Alignment:	GCCCAGCTCCCA -CNGTCCTCCC-

Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer

Match Rank:	10
Score:	0.56
Offset:	-2
Orientation:	forward strand
Alignment:	--GCCCAGCTCCCA YGGCCCCGCCCC--