Information for 5-YTGCCAAV (Motif 5)

A G T C A C G T A C T G A T G C A G T C C G T A C T G A T A C G
Reverse Opposite:
A T G C A G C T A C G T A C T G A T C G A G T C C G T A C T A G
p-value:1e-26
log p-value:-6.050e+01
Information Content per bp:1.837
Number of Target Sequences with motif612.0
Percentage of Target Sequences with motif29.42%
Number of Background Sequences with motif9170.2
Percentage of Background Sequences with motif19.59%
Average Position of motif in Targets100.4 +/- 54.8bp
Average Position of motif in Background99.4 +/- 66.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:YTGCCAAV
TTGCCAAG
 A G T C A C G T A C T G A T G C A G T C C G T A C T G A T A C G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-YTGCCAAV-
GGTGCCAAGT
 A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.2/Jaspar

Match Rank:3
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-YTGCCAAV--
NNTGCCAAGNN
 A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-YTGCCAAV
CGTGCCAAG
 A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A T A C G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.81
Offset:0
Orientation:forward strand
Alignment:YTGCCAAV-
ATGCCAACC
 A G T C A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.80
Offset:1
Orientation:forward strand
Alignment:YTGCCAAV-
-TGCCAGCB
 A G T C A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T
A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-YTGCCAAV
GCTGTCAA-
 A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A T A C G
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-YTGCCAAV
RHTGWCAR-
 A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A T A C G
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---YTGCCAAV-----
ACTATGCCAACCTACC
 A C G T A C G T A C G T A G T C A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.74
Offset:1
Orientation:forward strand
Alignment:YTGCCAAV-
-TGTCANYT
 A G T C A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T