Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2080)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46758)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-122	-2.817e+02	0.0000	238.0	11.44%	734.1	1.57%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-90	-2.076e+02	0.0000	246.0	11.83%	1134.5	2.42%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-52	-1.220e+02	0.0000	491.0	23.61%	5395.7	11.53%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-52	-1.214e+02	0.0000	370.0	17.79%	3508.3	7.50%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-51	-1.186e+02	0.0000	473.0	22.74%	5165.0	11.04%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-49	-1.149e+02	0.0000	618.0	29.71%	7724.6	16.50%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-48	-1.115e+02	0.0000	514.0	24.71%	5988.4	12.80%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-47	-1.091e+02	0.0000	354.0	17.02%	3458.1	7.39%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-44	-1.027e+02	0.0000	490.0	23.56%	5769.9	12.33%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-43	-1.012e+02	0.0000	717.0	34.47%	9902.5	21.16%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-43	-1.008e+02	0.0000	395.0	18.99%	4239.2	9.06%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-42	-9.806e+01	0.0000	634.0	30.48%	8435.3	18.02%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-38	-8.783e+01	0.0000	611.0	29.38%	8289.8	17.71%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-37	-8.697e+01	0.0000	367.0	17.64%	4054.5	8.66%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-36	-8.403e+01	0.0000	541.0	26.01%	7112.5	15.20%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-35	-8.246e+01	0.0000	485.0	23.32%	6153.7	13.15%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-34	-7.849e+01	0.0000	218.0	10.48%	1933.6	4.13%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-31	-7.319e+01	0.0000	389.0	18.70%	4716.8	10.08%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-29	-6.879e+01	0.0000	618.0	29.71%	9000.1	19.23%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-28	-6.566e+01	0.0000	365.0	17.55%	4487.4	9.59%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-28	-6.486e+01	0.0000	251.0	12.07%	2641.5	5.64%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-27	-6.406e+01	0.0000	676.0	32.50%	10290.5	21.99%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-22	-5.280e+01	0.0000	137.0	6.59%	1165.4	2.49%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-22	-5.140e+01	0.0000	188.0	9.04%	1922.0	4.11%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-20	-4.809e+01	0.0000	601.0	28.89%	9430.5	20.15%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-20	-4.763e+01	0.0000	317.0	15.24%	4127.9	8.82%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-20	-4.680e+01	0.0000	167.0	8.03%	1686.7	3.60%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-19	-4.583e+01	0.0000	184.0	8.85%	1963.7	4.20%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-19	-4.458e+01	0.0000	288.0	13.85%	3707.0	7.92%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-19	-4.387e+01	0.0000	449.0	21.59%	6657.7	14.23%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-18	-4.310e+01	0.0000	1305.0	62.74%	24805.2	53.00%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-18	-4.263e+01	0.0000	228.0	10.96%	2739.7	5.85%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-18	-4.238e+01	0.0000	207.0	9.95%	2400.9	5.13%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-17	-3.982e+01	0.0000	260.0	12.50%	3354.9	7.17%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-16	-3.907e+01	0.0000	203.0	9.76%	2411.6	5.15%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-16	-3.896e+01	0.0000	321.0	15.43%	4459.6	9.53%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-16	-3.871e+01	0.0000	226.0	10.87%	2803.9	5.99%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-16	-3.857e+01	0.0000	99.0	4.76%	840.6	1.80%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-16	-3.778e+01	0.0000	345.0	16.59%	4936.6	10.55%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-16	-3.718e+01	0.0000	660.0	31.73%	11111.7	23.74%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-16	-3.685e+01	0.0000	193.0	9.28%	2299.6	4.91%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-14	-3.301e+01	0.0000	841.0	40.43%	15124.7	32.32%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-13	-3.158e+01	0.0000	524.0	25.19%	8643.1	18.47%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-13	-3.132e+01	0.0000	194.0	9.33%	2456.2	5.25%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-12	-2.990e+01	0.0000	68.0	3.27%	540.5	1.15%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-12	-2.982e+01	0.0000	352.0	16.92%	5368.6	11.47%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-12	-2.933e+01	0.0000	124.0	5.96%	1358.4	2.90%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-12	-2.872e+01	0.0000	231.0	11.11%	3178.6	6.79%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-11	-2.630e+01	0.0000	472.0	22.69%	7874.4	16.82%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-10	-2.375e+01	0.0000	206.0	9.90%	2897.2	6.19%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-10	-2.321e+01	0.0000	315.0	15.14%	4949.4	10.58%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-9	-2.269e+01	0.0000	50.0	2.40%	395.0	0.84%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-9	-2.201e+01	0.0000	277.0	13.32%	4278.2	9.14%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-9	-2.179e+01	0.0000	342.0	16.44%	5539.9	11.84%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-8	-2.071e+01	0.0000	86.0	4.13%	943.8	2.02%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-8	-2.036e+01	0.0000	138.0	6.63%	1808.2	3.86%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-8	-2.027e+01	0.0000	191.0	9.18%	2750.0	5.88%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-8	-2.024e+01	0.0000	60.0	2.88%	563.4	1.20%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-8	-1.992e+01	0.0000	113.0	5.43%	1397.9	2.99%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-8	-1.968e+01	0.0000	399.0	19.18%	6779.3	14.48%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-8	-1.967e+01	0.0000	73.0	3.51%	764.5	1.63%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-8	-1.911e+01	0.0000	164.0	7.88%	2305.5	4.93%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-8	-1.860e+01	0.0000	631.0	30.34%	11630.4	24.85%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-8	-1.850e+01	0.0000	123.0	5.91%	1605.2	3.43%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-8	-1.848e+01	0.0000	51.0	2.45%	463.0	0.99%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-7	-1.788e+01	0.0000	202.0	9.71%	3047.0	6.51%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-7	-1.694e+01	0.0000	497.0	23.89%	8952.5	19.13%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-7	-1.687e+01	0.0000	246.0	11.83%	3924.8	8.39%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-7	-1.681e+01	0.0000	148.0	7.12%	2099.5	4.49%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-7	-1.664e+01	0.0000	182.0	8.75%	2726.3	5.83%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-6	-1.592e+01	0.0000	349.0	16.78%	6002.1	12.82%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-6	-1.587e+01	0.0000	157.0	7.55%	2297.4	4.91%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-6	-1.541e+01	0.0000	813.0	39.09%	15796.0	33.75%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-6	-1.522e+01	0.0000	174.0	8.37%	2637.2	5.63%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-6	-1.506e+01	0.0000	196.0	9.42%	3057.4	6.53%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-6	-1.489e+01	0.0000	76.0	3.65%	914.4	1.95%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-6	-1.473e+01	0.0000	260.0	12.50%	4307.9	9.20%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-6	-1.461e+01	0.0000	157.0	7.55%	2347.6	5.02%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-6	-1.412e+01	0.0000	225.0	10.82%	3658.3	7.82%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-6	-1.407e+01	0.0000	201.0	9.66%	3199.6	6.84%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-6	-1.402e+01	0.0000	209.0	10.05%	3355.3	7.17%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-6	-1.383e+01	0.0000	301.0	14.47%	5171.8	11.05%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-5	-1.373e+01	0.0000	234.0	11.25%	3854.1	8.23%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-5	-1.365e+01	0.0000	145.0	6.97%	2165.3	4.63%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-5	-1.293e+01	0.0000	41.0	1.97%	409.0	0.87%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-5	-1.289e+01	0.0000	84.0	4.04%	1102.1	2.35%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-5	-1.277e+01	0.0000	38.0	1.83%	367.2	0.78%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-5	-1.256e+01	0.0000	72.0	3.46%	908.9	1.94%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-5	-1.243e+01	0.0000	163.0	7.84%	2555.4	5.46%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-5	-1.233e+01	0.0000	239.0	11.49%	4031.5	8.61%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-5	-1.232e+01	0.0000	171.0	8.22%	2713.0	5.80%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-5	-1.217e+01	0.0000	199.0	9.57%	3258.2	6.96%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-4	-1.143e+01	0.0000	204.0	9.81%	3396.5	7.26%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-4	-1.139e+01	0.0001	82.0	3.94%	1114.5	2.38%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-4	-1.111e+01	0.0001	239.0	11.49%	4106.4	8.77%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-4	-1.085e+01	0.0001	150.0	7.21%	2384.9	5.10%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-4	-1.079e+01	0.0001	159.0	7.64%	2559.8	5.47%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-4	-1.067e+01	0.0001	37.0	1.78%	389.1	0.83%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-1.055e+01	0.0001	65.0	3.12%	846.9	1.81%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-4	-1.050e+01	0.0001	56.0	2.69%	696.2	1.49%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-4	-1.042e+01	0.0001	93.0	4.47%	1343.4	2.87%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-4	-1.040e+01	0.0001	74.0	3.56%	1006.2	2.15%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-4	-1.005e+01	0.0002	227.0	10.91%	3935.8	8.41%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-4	-9.986e+00	0.0002	85.0	4.09%	1215.3	2.60%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-4	-9.739e+00	0.0002	189.0	9.09%	3201.9	6.84%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-4	-9.732e+00	0.0002	288.0	13.85%	5191.0	11.09%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-4	-9.714e+00	0.0002	179.0	8.61%	3006.9	6.42%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-4	-9.703e+00	0.0002	277.0	13.32%	4968.4	10.62%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-4	-9.297e+00	0.0004	10.0	0.48%	49.4	0.11%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-3	-9.198e+00	0.0004	977.0	46.97%	20079.5	42.90%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-3	-9.035e+00	0.0005	27.0	1.30%	269.1	0.57%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-3	-9.017e+00	0.0005	81.0	3.89%	1179.9	2.52%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-3	-9.002e+00	0.0005	99.0	4.76%	1510.7	3.23%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-3	-8.814e+00	0.0006	155.0	7.45%	2589.1	5.53%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-3	-8.764e+00	0.0006	132.0	6.35%	2147.0	4.59%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-3	-8.716e+00	0.0006	93.0	4.47%	1411.2	3.02%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-8.413e+00	0.0008	367.0	17.64%	6937.8	14.82%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-8.220e+00	0.0010	238.0	11.44%	4287.4	9.16%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-3	-8.212e+00	0.0010	382.0	18.37%	7271.3	15.54%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-8.203e+00	0.0010	385.0	18.51%	7335.4	15.67%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-8.181e+00	0.0010	278.0	13.37%	5110.0	10.92%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-8.044e+00	0.0011	14.0	0.67%	104.0	0.22%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-3	-7.871e+00	0.0013	271.0	13.03%	4992.0	10.67%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-3	-7.840e+00	0.0014	20.0	0.96%	187.8	0.40%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-3	-7.815e+00	0.0014	423.0	20.34%	8177.7	17.47%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-3	-7.532e+00	0.0018	99.0	4.76%	1578.2	3.37%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-7.230e+00	0.0024	122.0	5.87%	2037.9	4.35%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-3	-7.021e+00	0.0030	22.0	1.06%	231.0	0.49%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-3	-7.001e+00	0.0030	30.0	1.44%	356.9	0.76%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-6.860e+00	0.0035	243.0	11.68%	4501.5	9.62%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-6.779e+00	0.0037	216.0	10.38%	3953.2	8.45%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-2	-6.468e+00	0.0050	392.0	18.85%	7667.5	16.38%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-2	-6.177e+00	0.0067	7.0	0.34%	39.4	0.08%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-6.142e+00	0.0069	20.0	0.96%	216.8	0.46%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-6.019e+00	0.0077	507.0	24.38%	10190.2	21.77%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-2	-6.008e+00	0.0077	330.0	15.87%	6404.9	13.69%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-5.986e+00	0.0079	126.0	6.06%	2193.3	4.69%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-5.882e+00	0.0086	41.0	1.97%	575.7	1.23%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-5.874e+00	0.0087	218.0	10.48%	4073.7	8.70%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.819e+00	0.0091	62.0	2.98%	961.2	2.05%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-5.805e+00	0.0091	56.0	2.69%	850.3	1.82%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-2	-5.795e+00	0.0092	219.0	10.53%	4102.0	8.76%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-2	-5.780e+00	0.0092	286.0	13.75%	5501.0	11.75%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-5.679e+00	0.0102	130.0	6.25%	2294.5	4.90%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-5.659e+00	0.0103	19.0	0.91%	210.4	0.45%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.547e+00	0.0114	21.0	1.01%	244.0	0.52%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.445e+00	0.0126	110.0	5.29%	1911.5	4.08%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-2	-5.442e+00	0.0126	486.0	23.37%	9816.0	20.97%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-5.382e+00	0.0132	262.0	12.60%	5039.6	10.77%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-5.360e+00	0.0134	289.0	13.89%	5610.2	11.99%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.331e+00	0.0137	135.0	6.49%	2420.1	5.17%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-5.174e+00	0.0159	102.0	4.90%	1770.9	3.78%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-5.159e+00	0.0161	32.0	1.54%	440.7	0.94%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-5.040e+00	0.0180	352.0	16.92%	6987.1	14.93%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2	-4.990e+00	0.0188	248.0	11.92%	4787.2	10.23%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-2	-4.964e+00	0.0192	511.0	24.57%	10427.9	22.28%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-4.917e+00	0.0200	156.0	7.50%	2881.6	6.16%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-4.864e+00	0.0209	754.0	36.25%	15774.4	33.70%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-4.864e+00	0.0209	92.0	4.42%	1592.1	3.40%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-2	-4.824e+00	0.0215	212.0	10.19%	4050.3	8.65%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-4.682e+00	0.0246	179.0	8.61%	3377.5	7.22%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-4.420e+00	0.0318	42.0	2.02%	649.1	1.39%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-4.250e+00	0.0374	696.0	33.46%	14603.9	31.20%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-4.205e+00	0.0389	459.0	22.07%	9415.4	20.12%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-4.204e+00	0.0389	104.0	5.00%	1879.9	4.02%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-4.190e+00	0.0390	348.0	16.73%	7016.7	14.99%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-4.179e+00	0.0392	229.0	11.01%	4478.7	9.57%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-3.971e+00	0.0480	49.0	2.36%	803.7	1.72%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-1	-3.952e+00	0.0487	499.0	23.99%	10330.0	22.07%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-1	-3.914e+00	0.0502	21.0	1.01%	286.4	0.61%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.891e+00	0.0511	123.0	5.91%	2293.3	4.90%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.867e+00	0.0521	80.0	3.85%	1420.5	3.04%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.744e+00	0.0585	121.0	5.82%	2265.8	4.84%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-3.722e+00	0.0595	95.0	4.57%	1734.8	3.71%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-1	-3.669e+00	0.0624	167.0	8.03%	3230.3	6.90%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.639e+00	0.0639	117.0	5.62%	2192.8	4.69%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-3.603e+00	0.0659	218.0	10.48%	4315.1	9.22%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.574e+00	0.0674	71.0	3.41%	1260.3	2.69%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-3.451e+00	0.0758	57.0	2.74%	989.5	2.11%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-3.443e+00	0.0760	137.0	6.59%	2626.5	5.61%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-3.401e+00	0.0789	92.0	4.42%	1699.1	3.63%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-3.360e+00	0.0817	97.0	4.66%	1805.8	3.86%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.305e+00	0.0858	337.0	16.20%	6914.9	14.77%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-1	-3.261e+00	0.0892	344.0	16.54%	7073.8	15.11%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.221e+00	0.0923	39.0	1.88%	649.1	1.39%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.220e+00	0.0923	524.0	25.19%	11013.1	23.53%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-3.215e+00	0.0923	17.0	0.82%	237.1	0.51%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.988e+00	0.1148	41.0	1.97%	701.2	1.50%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.971e+00	0.1161	94.0	4.52%	1778.6	3.80%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-1	-2.893e+00	0.1248	31.0	1.49%	511.3	1.09%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.889e+00	0.1248	65.0	3.12%	1189.4	2.54%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.874e+00	0.1258	58.0	2.79%	1048.7	2.24%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.854e+00	0.1277	56.0	2.69%	1009.9	2.16%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.764e+00	0.1390	207.0	9.95%	4194.9	8.96%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-2.756e+00	0.1394	33.0	1.59%	557.4	1.19%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-1	-2.749e+00	0.1398	148.0	7.12%	2936.6	6.27%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.676e+00	0.1496	307.0	14.76%	6371.7	13.61%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-2.616e+00	0.1580	186.0	8.94%	3765.4	8.05%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.595e+00	0.1605	90.0	4.33%	1731.7	3.70%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.567e+00	0.1643	14.0	0.67%	204.5	0.44%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1	-2.516e+00	0.1720	382.0	18.37%	8040.7	17.18%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-2.505e+00	0.1731	199.0	9.57%	4061.9	8.68%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.494e+00	0.1741	410.0	19.71%	8659.5	18.50%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-2.472e+00	0.1770	3.0	0.14%	23.4	0.05%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-2.452e+00	0.1798	112.0	5.38%	2209.4	4.72%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-2.448e+00	0.1798	22.0	1.06%	359.2	0.77%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-2.445e+00	0.1798	42.0	2.02%	755.3	1.61%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-2.436e+00	0.1800	50.0	2.40%	918.8	1.96%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-2.419e+00	0.1823	17.0	0.82%	265.7	0.57%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.408e+00	0.1834	125.0	6.01%	2490.8	5.32%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.389e+00	0.1860	46.0	2.21%	840.8	1.80%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-2.306e+00	0.2011	43.0	2.07%	785.0	1.68%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.297e+00	0.2021	373.0	17.93%	7889.7	16.86%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.276e+00	0.2054	402.0	19.33%	8531.3	18.23%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.206e+00	0.2192	96.0	4.62%	1899.4	4.06%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.200e+00	0.2195	41.0	1.97%	752.1	1.61%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.183e+00	0.2223	13.0	0.62%	199.5	0.43%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.113e+00	0.2374	76.0	3.65%	1487.3	3.18%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.042e+00	0.2536	66.0	3.17%	1284.4	2.74%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.034e+00	0.2545	60.0	2.88%	1159.3	2.48%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.031e+00	0.2545	137.0	6.59%	2798.7	5.98%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.025e+00	0.2545	649.0	31.20%	14066.3	30.05%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.967e+00	0.2684	220.0	10.58%	4608.0	9.85%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.877e+00	0.2926	102.0	4.90%	2068.8	4.42%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.814e+00	0.3100	43.0	2.07%	824.2	1.76%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.811e+00	0.3100	39.0	1.88%	741.4	1.58%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.791e+00	0.3144	156.0	7.50%	3247.8	6.94%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.783e+00	0.3156	94.0	4.52%	1909.4	4.08%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.778e+00	0.3157	19.0	0.91%	334.1	0.71%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.755e+00	0.3219	170.0	8.17%	3558.2	7.60%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.746e+00	0.3233	138.0	6.63%	2864.3	6.12%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.741e+00	0.3234	2.0	0.10%	17.4	0.04%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.734e+00	0.3242	44.0	2.12%	852.7	1.82%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.693e+00	0.3363	56.0	2.69%	1109.3	2.37%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.674e+00	0.3416	6.0	0.29%	86.8	0.19%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.645e+00	0.3500	369.0	17.74%	7958.4	17.00%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.570e+00	0.3756	86.0	4.13%	1766.2	3.77%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-1.526e+00	0.3910	536.0	25.77%	11704.0	25.01%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.479e+00	0.4082	259.0	12.45%	5570.6	11.90%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.465e+00	0.4119	318.0	15.29%	6878.8	14.70%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.465e+00	0.4119	377.0	18.12%	8186.4	17.49%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.389e+00	0.4407	163.0	7.84%	3476.5	7.43%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.383e+00	0.4416	61.0	2.93%	1252.9	2.68%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.377e+00	0.4424	100.0	4.81%	2099.2	4.49%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.377e+00	0.4424	18.0	0.87%	338.3	0.72%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.341e+00	0.4552	23.0	1.11%	446.0	0.95%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.322e+00	0.4621	10.0	0.48%	177.8	0.38%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.312e+00	0.4647	62.0	2.98%	1283.1	2.74%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.301e+00	0.4679	35.0	1.68%	703.3	1.50%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.261e+00	0.4852	402.0	19.33%	8806.4	18.82%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.238e+00	0.4943	59.0	2.84%	1228.5	2.62%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.220e+00	0.5012	520.0	25.00%	11453.9	24.47%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.214e+00	0.5027	256.0	12.31%	5574.7	11.91%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.174e+00	0.5209	419.0	20.14%	9215.8	19.69%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.157e+00	0.5279	108.0	5.19%	2314.7	4.95%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.141e+00	0.5339	89.0	4.28%	1899.5	4.06%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.135e+00	0.5354	57.0	2.74%	1199.8	2.56%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.130e+00	0.5358	295.0	14.18%	6466.5	13.82%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.123e+00	0.5375	55.0	2.64%	1157.5	2.47%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.100e+00	0.5479	103.0	4.95%	2215.3	4.73%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.098e+00	0.5479	24.0	1.15%	487.5	1.04%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.098e+00	0.5479	24.0	1.15%	487.3	1.04%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.090e+00	0.5479	323.0	15.53%	7103.5	15.18%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.075e+00	0.5531	6.0	0.29%	107.6	0.23%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.042e+00	0.5698	18.0	0.87%	363.7	0.78%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.013e+00	0.5842	13.0	0.62%	258.7	0.55%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-9.881e-01	0.5968	6.0	0.29%	111.5	0.24%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.869e-01	0.5968	534.0	25.67%	11861.7	25.34%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-9.816e-01	0.5968	69.0	3.32%	1488.0	3.18%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-9.738e-01	0.5986	177.0	8.51%	3887.0	8.31%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-9.693e-01	0.5991	40.0	1.92%	850.5	1.82%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-9.614e-01	0.6016	15.0	0.72%	305.7	0.65%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-9.375e-01	0.6140	52.0	2.50%	1119.1	2.39%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.347e-01	0.6140	942.0	45.29%	21046.4	44.97%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-9.308e-01	0.6140	166.0	7.98%	3653.9	7.81%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-9.042e-01	0.6278	14.0	0.67%	288.2	0.62%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-8.801e-01	0.6408	413.0	19.86%	9196.3	19.65%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.720e-01	0.6437	123.0	5.91%	2710.8	5.79%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-8.583e-01	0.6503	52.0	2.50%	1132.5	2.42%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-8.398e-01	0.6600	47.0	2.26%	1024.3	2.19%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.333e-01	0.6620	6.0	0.29%	119.3	0.25%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-8.313e-01	0.6620	275.0	13.22%	6123.6	13.08%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-8.295e-01	0.6620	117.0	5.62%	2587.8	5.53%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-8.037e-01	0.6747	264.0	12.69%	5887.5	12.58%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-7.952e-01	0.6780	27.0	1.30%	586.8	1.25%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-7.665e-01	0.6953	37.0	1.78%	813.8	1.74%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.593e-01	0.6979	45.0	2.16%	993.9	2.12%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.573e-01	0.6979	27.0	1.30%	591.8	1.26%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-7.571e-01	0.6979	331.0	15.91%	7410.6	15.83%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-7.462e-01	0.6998	256.0	12.31%	5730.0	12.24%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-7.376e-01	0.7034	43.0	2.07%	952.8	2.04%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-7.342e-01	0.7034	13.0	0.62%	281.4	0.60%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.994e-01	0.7258	154.0	7.40%	3455.5	7.38%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.859e-01	0.7332	4.0	0.19%	83.8	0.18%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.845e-01	0.7332	44.0	2.12%	984.6	2.10%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.796e-01	0.7332	71.0	3.41%	1593.2	3.40%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.674e-01	0.7394	495.0	23.80%	11143.6	23.81%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.296e-01	0.7652	290.0	13.94%	6547.0	13.99%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-6.281e-01	0.7652	38.0	1.83%	859.9	1.84%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.189e-01	0.7683	166.0	7.98%	3754.3	8.02%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-6.160e-01	0.7683	6.0	0.29%	133.8	0.29%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.156e-01	0.7683	48.0	2.31%	1088.8	2.33%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.101e-01	0.7683	90.0	4.33%	2040.3	4.36%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-6.043e-01	0.7693	67.0	3.22%	1521.3	3.25%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-6.040e-01	0.7693	100.0	4.81%	2268.8	4.85%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.008e-01	0.7693	23.0	1.11%	523.4	1.12%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.800e-01	0.7806	16.0	0.77%	366.1	0.78%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-5.729e-01	0.7836	13.0	0.62%	298.8	0.64%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.350e-01	0.8112	16.0	0.77%	373.0	0.80%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.194e-01	0.8213	97.0	4.66%	2227.2	4.76%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-5.131e-01	0.8238	57.0	2.74%	1317.7	2.82%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-5.010e-01	0.8312	59.0	2.84%	1366.7	2.92%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.956e-01	0.8330	14.0	0.67%	331.7	0.71%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-4.757e-01	0.8471	220.0	10.58%	5040.0	10.77%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-4.588e-01	0.8588	230.0	11.06%	5276.5	11.27%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-4.238e-01	0.8865	22.0	1.06%	530.3	1.13%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.208e-01	0.8865	35.0	1.68%	834.5	1.78%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.879e-01	0.9132	191.0	9.18%	4428.2	9.46%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.862e-01	0.9132	95.0	4.57%	2232.0	4.77%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.769e-01	0.9175	10.0	0.48%	253.6	0.54%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.762e-01	0.9175	24.0	1.15%	587.5	1.26%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.487e-01	0.9379	35.0	1.68%	853.9	1.82%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.179e-01	0.9642	13.0	0.62%	336.8	0.72%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.093e-01	0.9696	31.0	1.49%	770.6	1.65%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-3.081e-01	0.9696	152.0	7.31%	3582.1	7.65%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-3.013e-01	0.9714	115.0	5.53%	2733.8	5.84%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.009e-01	0.9714	54.0	2.60%	1315.7	2.81%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-2.869e-01	0.9794	218.0	10.48%	5112.5	10.92%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.848e-01	0.9794	18.0	0.87%	465.9	1.00%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.848e-01	0.9794	18.0	0.87%	465.9	1.00%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.819e-01	0.9794	335.0	16.11%	7791.6	16.65%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.807e-01	0.9794	124.0	5.96%	2953.1	6.31%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.782e-01	0.9794	213.0	10.24%	5004.7	10.69%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-2.729e-01	0.9794	99.0	4.76%	2378.6	5.08%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-2.616e-01	0.9835	6.0	0.29%	171.4	0.37%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.532e-01	0.9889	45.0	2.16%	1122.7	2.40%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.485e-01	0.9906	40.0	1.92%	1005.5	2.15%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.482e-01	0.9906	74.0	3.56%	1808.1	3.86%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.473e-01	0.9906	10.0	0.48%	276.5	0.59%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.414e-01	0.9906	21.0	1.01%	550.6	1.18%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.302e-01	0.9970	232.0	11.15%	5481.4	11.71%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.298e-01	0.9970	72.0	3.46%	1771.2	3.78%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-2.254e-01	0.9970	1.0	0.05%	36.0	0.08%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.234e-01	0.9970	8.0	0.38%	230.6	0.49%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.182e-01	0.9974	5.0	0.24%	152.6	0.33%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-2.092e-01	1.0000	56.0	2.69%	1404.1	3.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.044e-01	1.0000	3.0	0.14%	99.4	0.21%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.018e-01	1.0000	188.0	9.04%	4493.1	9.60%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.899e-01	1.0000	60.0	2.88%	1510.2	3.23%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.885e-01	1.0000	4.0	0.19%	130.1	0.28%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.808e-01	1.0000	8.0	0.38%	240.4	0.51%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.777e-01	1.0000	17.0	0.82%	472.2	1.01%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.750e-01	1.0000	34.0	1.63%	893.5	1.91%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.706e-01	1.0000	79.0	3.80%	1974.0	4.22%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.607e-01	1.0000	187.0	8.99%	4512.7	9.64%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.552e-01	1.0000	161.0	7.74%	3913.6	8.36%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.452e-01	1.0000	12.0	0.58%	356.0	0.76%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.385e-01	1.0000	1.0	0.05%	46.2	0.10%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.344e-01	1.0000	851.0	40.91%	19718.4	42.13%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.325e-01	1.0000	7.0	0.34%	227.5	0.49%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.237e-01	1.0000	15.0	0.72%	443.1	0.95%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.236e-01	1.0000	19.0	0.91%	546.4	1.17%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.156e-01	1.0000	121.0	5.82%	3020.1	6.45%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.130e-01	1.0000	90.0	4.33%	2287.5	4.89%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.053e-01	1.0000	12.0	0.58%	373.4	0.80%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.759e-02	1.0000	408.0	19.62%	9718.0	20.76%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-9.625e-02	1.0000	201.0	9.66%	4928.9	10.53%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-9.296e-02	1.0000	164.0	7.88%	4066.8	8.69%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-8.820e-02	1.0000	21.0	1.01%	619.6	1.32%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-8.585e-02	1.0000	224.0	10.77%	5485.1	11.72%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-7.622e-02	1.0000	412.0	19.81%	9864.1	21.08%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.593e-02	1.0000	18.0	0.87%	550.3	1.18%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-7.010e-02	1.0000	125.0	6.01%	3183.0	6.80%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.092e-02	1.0000	10.0	0.48%	345.2	0.74%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-6.044e-02	1.0000	12.0	0.58%	401.2	0.86%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-6.011e-02	1.0000	31.0	1.49%	902.5	1.93%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.985e-02	1.0000	374.0	17.98%	9037.5	19.31%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-5.087e-02	1.0000	5.0	0.24%	206.2	0.44%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-4.759e-02	1.0000	1.0	0.05%	69.7	0.15%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.564e-02	1.0000	78.0	3.75%	2098.8	4.48%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.514e-02	1.0000	13.0	0.62%	443.5	0.95%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.514e-02	1.0000	13.0	0.62%	443.5	0.95%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-4.453e-02	1.0000	79.0	3.80%	2125.6	4.54%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.089e-02	1.0000	56.0	2.69%	1564.3	3.34%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-3.939e-02	1.0000	221.0	10.62%	5541.6	11.84%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.185e-02	1.0000	26.0	1.25%	814.8	1.74%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-3.135e-02	1.0000	47.0	2.26%	1359.7	2.91%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.032e-02	1.0000	11.0	0.53%	405.8	0.87%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.318e-02	1.0000	108.0	5.19%	2903.9	6.20%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.113e-02	1.0000	13.0	0.62%	479.3	1.02%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.809e-02	1.0000	502.0	24.13%	12224.6	26.12%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.466e-02	1.0000	139.0	6.68%	3709.2	7.93%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.398e-02	1.0000	141.0	6.78%	3763.7	8.04%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.202e-02	1.0000	277.0	13.32%	7039.0	15.04%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.049e-02	1.0000	298.0	14.33%	7555.7	16.14%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-9.153e-03	1.0000	11.0	0.53%	456.3	0.97%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-8.989e-03	1.0000	1.0	0.05%	106.6	0.23%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-8.570e-03	1.0000	150.0	7.21%	4036.1	8.62%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-6.011e-03	1.0000	103.0	4.95%	2912.0	6.22%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-5.078e-03	1.0000	206.0	9.90%	5454.2	11.65%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-4.522e-03	1.0000	596.0	28.65%	14633.6	31.27%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-3.733e-03	1.0000	444.0	21.35%	11136.1	23.79%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.621e-03	1.0000	616.0	29.62%	15130.3	32.33%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.468e-03	1.0000	101.0	4.86%	2909.9	6.22%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-2.133e-03	1.0000	65.0	3.12%	2023.0	4.32%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.777e-03	1.0000	28.0	1.35%	1029.4	2.20%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.527e-03	1.0000	8.0	0.38%	426.1	0.91%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.245e-03	1.0000	4.0	0.19%	287.7	0.61%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-7.880e-04	1.0000	106.0	5.10%	3157.1	6.75%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.820e-04	1.0000	48.0	2.31%	1639.2	3.50%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.950e-04	1.0000	151.0	7.26%	4319.2	9.23%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.710e-04	1.0000	131.0	6.30%	3819.9	8.16%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-4.180e-04	1.0000	35.0	1.68%	1302.4	2.78%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-3.230e-04	1.0000	91.0	4.38%	2835.4	6.06%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.700e-04	1.0000	82.0	3.94%	2641.5	5.64%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.350e-04	1.0000	852.0	40.96%	21014.0	44.90%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-7.500e-05	1.0000	65.0	3.12%	2233.8	4.77%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.800e-05	1.0000	627.0	30.14%	16003.1	34.19%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.000e-06	1.0000	19.0	0.91%	1023.3	2.19%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-0.000e+00	1.0000	145.0	6.97%	4706.3	10.06%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	5.0	0.24%	566.4	1.21%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	11.3	0.02%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	205.0	9.86%	7973.7	17.04%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	29.4	0.06%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	48.6	0.10%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	212.0	10.19%	9086.1	19.41%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	102.0	4.90%	5112.9	10.92%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	5.8	0.01%