Information for 3-CAGGGGGCGC (Motif 5)

A G T C C G T A A C T G A C T G C A T G A C T G A C T G A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C C T A G A G T C A G T C G T A C A G T C A G T C A C G T C T A G
p-value:1e-11
log p-value:-2.623e+01
Information Content per bp:1.911
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif5.05%
Number of Background Sequences with motif319.2
Percentage of Background Sequences with motif0.65%
Average Position of motif in Targets92.2 +/- 67.0bp
Average Position of motif in Background94.8 +/- 58.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCFL/MA1102.1/Jaspar

Match Rank:1
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---CAGGGGGCGC-
CACCAGGGGGCACC
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G C A T G A C T G A C T G A G T C A C T G A G T C A C G T
T A G C T C G A T A G C A G T C T G C A T A C G T C A G A C T G T A C G A C T G G T A C T C G A A T G C A G T C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----CAGGGGGCGC-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G C A T G A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0076.1_Sp4_1/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CAGGGGGCGC----
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G C A T G A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

INSM1/MA0155.1/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CAGGGGGCGC
TGTCAGGGGGCG-
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G C A T G A C T G A C T G A G T C A C T G A G T C
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.72
Offset:-7
Orientation:forward strand
Alignment:-------CAGGGGGCGC--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G C A T G A C T G A C T G A G T C A C T G A G T C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CAGGGGGCGC
NNCAGGTGNN--
 A C G T A C G T A G T C C G T A A C T G A C T G C A T G A C T G A C T G A G T C A C T G A G T C
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G A C G T A C G T

ZEB1/MA0103.3/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CAGGGGGCGC
NNGCAGGTGNN--
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G C A T G A C T G A C T G A G T C A C T G A G T C
T A C G A T G C T A C G A G T C T C G A A T C G T C A G G A C T T C A G T A C G T A C G A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CAGGGGGCGC
SDGCAGGTGCNS-
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G C A T G A C T G A C T G A G T C A C T G A G T C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGGGGGCGC------
TTGGGGGCGCCCCTAG
 A G T C C G T A A C T G A C T G C A T G A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.66
Offset:-7
Orientation:reverse strand
Alignment:-------CAGGGGGCGC---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G C A T G A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T