Information for 7-GCACACTGTAGG (Motif 9)

A C T G G T A C C G T A A G T C C G T A A G T C A C G T A C T G G A C T C G T A A C T G C T A G
Reverse Opposite:
A G T C A G T C A C G T C T G A A G T C C G T A A C T G A C G T A C T G A C G T A C T G A G T C
p-value:1e-10
log p-value:-2.394e+01
Information Content per bp:1.910
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif14.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets71.1 +/- 40.4bp
Average Position of motif in Background104.3 +/- 63.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCACACTGTAGG---
GCACAYAGTAGGKCY
 A C T G G T A C C G T A A G T C C G T A A G T C A C G T A C T G G A C T C G T A A C T G C T A G A C G T A C G T A C G T
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCACACTGTAGG---
AATCGCACTGCATTCCG
 A C G T A C G T A C T G G T A C C G T A A G T C C G T A A G T C A C G T A C T G G A C T C G T A A C T G C T A G A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCACACTGTAGG---
CCACACAGCAGGAGA
 A C T G G T A C C G T A A G T C C G T A A G T C A C G T A C T G G A C T C G T A A C T G C T A G A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCACACTGTAGG---
---CACAGCAGGGGG
 A C T G G T A C C G T A A G T C C G T A A G T C A C G T A C T G G A C T C G T A A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCACACTGTAGG---
GAGCACAGCAGGACA
 A C T G G T A C C G T A A G T C C G T A A G T C A C G T A C T G G A C T C G T A A C T G C T A G A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

MTF1/MA0863.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCACACTGTAGG
TTTGCACACGGCAC-
 A C G T A C G T A C G T A C T G G T A C C G T A A G T C C G T A A G T C A C G T A C T G G A C T C G T A A C T G C T A G
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCACACTGTAGG
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T A C G T A C T G G T A C C G T A A G T C C G T A A G T C A C G T A C T G G A C T C G T A A C T G C T A G
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCACACTGTAGG-----
--DCHCAGCAGGRGGCC
 A C T G G T A C C G T A A G T C C G T A A G T C A C G T A C T G G A C T C G T A A C T G C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCACACTGTAGG---
CCACACAGCAGGAGA
 A C T G G T A C C G T A A G T C C G T A A G T C A C G T A C T G G A C T C G T A A C T G C T A G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZSCAN4/MA1155.1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCACACTGTAGG
TGCACACACTGAAAA
 A C G T A C G T A C G T A C T G G T A C C G T A A G T C C G T A A G T C A C G T A C T G G A C T C G T A A C T G C T A G
G A C T T C A G A T G C C G T A A G T C C G T A G A T C T G C A G T A C A C G T A C T G C G T A G T C A C T G A C T G A