Information for 10-GCAGTCTTAAAA (Motif 10)

A C T G A G T C G T C A A C T G A C G T A G T C A C G T A G C T C G T A C G T A C T G A C G T A
Reverse Opposite:
A C G T A G C T C G A T A C G T C T G A C G T A A C T G C G T A A G T C A C G T A C T G A G T C
p-value:1e-11
log p-value:-2.542e+01
Information Content per bp:1.906
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.8 +/- 23.1bp
Average Position of motif in Background127.6 +/- 6.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD12/MA0873.1/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GCAGTCTTAAAA-
--AGTCGTAAAAA
 A C T G A G T C G T C A A C T G A C G T A G T C A C G T A G C T C G T A C G T A C T G A C G T A A C G T
A C G T A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXC12/MA0906.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GCAGTCTTAAAA-
--GGTCGTAAAAA
 A C T G A G T C G T C A A C T G A C G T A G T C A C G T A G C T C G T A C G T A C T G A C G T A A C G T
A C G T A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCAGTCTTAAAA---
TAAAGTCGTAAAACGT
 A C G T A C T G A G T C G T C A A C T G A C G T A G T C A C G T A G C T C G T A C G T A C T G A C G T A A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GCAGTCTTAAAA---
TAAAGTCGTAAAACAT
 A C G T A C T G A G T C G T C A A C T G A C G T A G T C A C G T A G C T C G T A C G T A C T G A C G T A A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:5
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GCAGTCTTAAAA-
---GTCGTAAAAT
 A C T G A G T C G T C A A C T G A C G T A G T C A C G T A G C T C G T A C G T A C T G A C G T A A C G T
A C G T A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

HOXD11/MA0908.1/Jaspar

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GCAGTCTTAAAA-
---GTCGTAAAAA
 A C T G A G T C G T C A A C T G A C G T A G T C A C G T A G C T C G T A C G T A C T G A C G T A A C G T
A C G T A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

PH0066.1_Hoxc11/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCAGTCTTAAAA---
TAAAGTCGTAAAATAG
 A C G T A C T G A G T C G T C A A C T G A C G T A G T C A C G T A G C T C G T A C G T A C T G A C G T A A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

HOXC11/MA0651.1/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCAGTCTTAAAA-
--GGTCGTAAAAT
 A C T G A G T C G T C A A C T G A C G T A G T C A C G T A G C T C G T A C G T A C T G A C G T A A C G T
A C G T A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GCAGTCTTAAAA--
--GGTCGTAAAATT
 A C T G A G T C G T C A A C T G A C G T A G T C A C G T A G C T C G T A C G T A C T G A C G T A A C G T A C G T
A C G T A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GCAGTCTTAAAA----
TAAGGTCGTAAAATCCT
 A C G T A C T G A G T C G T C A A C T G A C G T A G T C A C G T A G C T C G T A C G T A C T G A C G T A A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T