Information for 6-GCAGCCTTGC (Motif 12)

C A T G A T G C C G T A A C T G A G T C A G T C A G C T A C G T A T C G T A G C
Reverse Opposite:
A T C G A T G C T G C A C T G A C T A G T C A G A G T C A C G T A T C G G T A C
p-value:1e-10
log p-value:-2.419e+01
Information Content per bp:1.851
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif7.36%
Number of Background Sequences with motif788.0
Percentage of Background Sequences with motif1.63%
Average Position of motif in Targets98.8 +/- 50.4bp
Average Position of motif in Background97.8 +/- 63.2bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCAGCCTTGC
BCAGACWA--
 C A T G A T G C C G T A A C T G A G T C A G T C A G C T A C G T A T C G T A G C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCAGCCTTGC
-CAGCC----
 C A T G A T G C C G T A A C T G A G T C A G T C A G C T A C G T A T C G T A G C
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GCAGCCTTGC-----
SCAGYCADGCATGAC
 C A T G A T G C C G T A A C T G A G T C A G T C A G C T A C G T A T C G T A G C A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

POL002.1_INR/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCAGCCTTGC
TCAGTCTT--
 C A T G A T G C C G T A A C T G A G T C A G T C A G C T A C G T A T C G T A G C
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCCTTGC
CACAGN-----
 A C G T C A T G A T G C C G T A A C T G A G T C A G T C A G C T A C G T A T C G T A G C
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCAGCCTTGC------
GCAGCCAAGCGTGACN
 C A T G A T G C C G T A A C T G A G T C A G T C A G C T A C G T A T C G T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCCTTGC
BNTGDCCTTG-
 A C G T C A T G A T G C C G T A A C T G A G T C A G T C A G C T A C G T A T C G T A G C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GCAGCCTTGC---
--NNACTTGCCTT
 C A T G A T G C C G T A A C T G A G T C A G T C A G C T A C G T A T C G T A G C A C G T A C G T A C G T
A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCAGCCTTGC-
-TGACCTTGAN
 C A T G A T G C C G T A A C T G A G T C A G T C A G C T A C G T A T C G T A G C A C G T
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GCAGCCTTGC
CCAGACRSVB
 C A T G A T G C C G T A A C T G A G T C A G T C A G C T A C G T A T C G T A G C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C