Information for 9-GGGAATAAAT (Motif 17)

A C T G A C T G T C A G C G T A G T C A G A C T C G T A G T C A C G T A A C G T
Reverse Opposite:
C G T A C G A T A C G T A C G T C T G A C A G T A C G T A G T C G T A C A G T C
p-value:1e-9
log p-value:-2.227e+01
Information Content per bp:1.845
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif4.06%
Number of Background Sequences with motif236.5
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets98.9 +/- 63.2bp
Average Position of motif in Background99.2 +/- 63.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0124.1_Obox5_1/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----GGGAATAAAT---
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A C G T A C T G A C T G T C A G C G T A G T C A G A C T C G T A G T C A C G T A A C G T A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PH0125.1_Obox5_2/Jaspar

Match Rank:2
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----GGGAATAAAT---
NANAGGGATTAATTATN
 A C G T A C G T A C G T A C G T A C T G A C T G T C A G C G T A G T C A G A C T C G T A G T C A C G T A A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---GGGAATAAAT---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C T G A C T G T C A G C G T A G T C A G A C T C G T A G T C A C G T A A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

Hoxc9/MA0485.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGGAATAAAT---
GGCCATAAATCAC
 A C T G A C T G T C A G C G T A G T C A G A C T C G T A G T C A C G T A A C G T A C G T A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GGGAATAAAT--
GGCCATAAATCA
 A C T G A C T G T C A G C G T A G T C A G A C T C G T A G T C A C G T A A C G T A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

PH0012.1_Cdx1/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GGGAATAAAT---
TAAGGTAATAAAATTA
 A C G T A C G T A C G T A C T G A C T G T C A G C G T A G T C A G A C T C G T A G T C A C G T A A C G T A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0122.1_Obox2/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GGGAATAAAT--
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G T C A G C G T A G T C A G A C T C G T A G T C A C G T A A C G T A C G T A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

PH0046.1_Hoxa10/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGGAATAAAT----
TAGGTAATAAAATTCA
 A C G T A C G T A C T G A C T G T C A G C G T A G T C A G A C T C G T A G T C A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

PH0121.1_Obox1/Jaspar

Match Rank:9
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----GGGAATAAAT--
TTAAGGGGATTAACTAC
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G T C A G C G T A G T C A G A C T C G T A G T C A C G T A A C G T A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGGAATAAAT-
GGTAATAAAAA
 A C T G A C T G T C A G C G T A G T C A G A C T C G T A G T C A C G T A A C G T A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A