Information for 4-AGCGAGTG (Motif 22)

C G T A T A C G T A G C T A C G G C T A C T A G A G C T T A C G
Reverse Opposite:
A T G C T C G A G A T C C G A T A T G C A T C G A T G C G C A T
p-value:1e-8
log p-value:-2.007e+01
Information Content per bp:1.403
Number of Target Sequences with motif94.0
Percentage of Target Sequences with motif23.86%
Number of Background Sequences with motif6225.7
Percentage of Background Sequences with motif12.86%
Average Position of motif in Targets91.1 +/- 52.2bp
Average Position of motif in Background99.5 +/- 62.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGCGAGTG
CAGCC----
 A C G T C G T A T A C G T A G C T A C G G C T A C T A G A G C T T A C G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGCGAGTG-
ACTAGCCAATCA
 A C G T A C G T A C G T C G T A T A C G T A G C T A C G G C T A C T A G A G C T T A C G A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

KLF4/MA0039.3/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGCGAGTG-
NNAGGGTGTGG
 A C G T A C G T C G T A T A C G T A G C T A C G G C T A C T A G A G C T T A C G A C G T
C T A G T A G C C G T A C T A G A C T G T C A G G A C T C A T G A G C T A C T G A C T G

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGCGAGTG
AGAGGAAGTG
 A C G T A C G T C G T A T A C G T A G C T A C G G C T A C T A G A G C T T A C G
C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGCGAGTG--
AGCCAATCGG
 C G T A T A C G T A G C T A C G G C T A C T A G A G C T T A C G A C G T A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

VENTX/MA0724.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGCGAGTG-
ACCGATTAG
 C G T A T A C G T A G C T A C G G C T A C T A G A G C T T A C G A C G T
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGCGAGTG---
-TTRAGTGSYK
 C G T A T A C G T A G C T A C G G C T A C T A G A G C T T A C G A C G T A C G T A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGCGAGTG
ACAGGAAGTG
 A C G T A C G T C G T A T A C G T A G C T A C G G C T A C T A G A G C T T A C G
T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCGAGTG----
TTGACCGAGAATTCC
 A C G T A C G T A C G T C G T A T A C G T A G C T A C G G C T A C T A G A G C T T A C G A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGCGAGTG
ACCACGTG
 C G T A T A C G T A G C T A C G G C T A C T A G A G C T T A C G
T C G A T A G C G A T C C T G A A T G C T A C G G C A T C T A G