Information for 1-WHTYTTGGCA (Motif 2)

G C T A G A C T A G C T A G T C A G C T C A G T C A T G A T C G T G A C G C T A
Reverse Opposite:
C G A T A C T G T A G C G T A C G T C A C T G A T C A G T C G A C T G A C G A T
p-value:1e-28
log p-value:-6.656e+01
Information Content per bp:1.531
Number of Target Sequences with motif489.0
Percentage of Target Sequences with motif55.38%
Number of Background Sequences with motif17723.4
Percentage of Background Sequences with motif36.68%
Average Position of motif in Targets97.4 +/- 54.2bp
Average Position of motif in Background99.3 +/- 62.6bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.46
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.90
Offset:3
Orientation:reverse strand
Alignment:WHTYTTGGCA-
---CTTGGCAA
 G C T A G A C T A G C T A G T C A G C T C A G T C A T G A T C G T G A C G C T A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:WHTYTTGGCA--
--NNTTGGCANN
 G C T A G A C T A G C T A G T C A G C T C A G T C A T G A T C G T G A C G C T A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.87
Offset:3
Orientation:reverse strand
Alignment:WHTYTTGGCA--
---NTTGGCANN
 G C T A G A C T A G C T A G T C A G C T C A G T C A T G A T C G T G A C G C T A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.85
Offset:1
Orientation:forward strand
Alignment:WHTYTTGGCA--
-TACTTGGCAGA
 G C T A G A C T A G C T A G T C A G C T C A G T C A T G A T C G T G A C G C T A A C G T A C G T
A C G T G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:WHTYTTGGCA-
--GGTTGGCAT
 G C T A G A C T A G C T A G T C A G C T C A G T C A T G A T C G T G A C G C T A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:WHTYTTGGCA
--VGCTGGCA
 G C T A G A C T A G C T A G T C A G C T C A G T C A T G A T C G T G A C G C T A
A C G T A C G T T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.70
Offset:4
Orientation:forward strand
Alignment:WHTYTTGGCA--
----YTGWCADY
 G C T A G A C T A G C T A G T C A G C T C A G T C A T G A T C G T G A C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.67
Offset:5
Orientation:forward strand
Alignment:WHTYTTGGCA---
-----TGTCANYT
 G C T A G A C T A G C T A G T C A G C T C A G T C A T G A T C G T G A C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--WHTYTTGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T G C T A G A C T A G C T A G T C A G C T C A G T C A T G A T C G T G A C G C T A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:WHTYTTGGCA-
-GGTCTGGCAT
 G C T A G A C T A G C T A G T C A G C T C A G T C A T G A T C G T G A C G C T A A C G T
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T