Information for 23-CTAACCCTAA (Motif 29)

A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C T G A C T G A C T G C G A T A C G T C G T A A C T G
p-value:1e-3
log p-value:-7.320e+00
Information Content per bp:1.975
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif21.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets102.2 +/- 34.6bp
Average Position of motif in Background128.9 +/- 49.5bp
Strand Bias (log2 ratio + to - strand density)2.4
Multiplicity (# of sites on avg that occur together)4.75
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTAACCCTAA
GCTAATCC---
 A C G T A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

PSE(SNAPc)/K562-mStart-Seq/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTAACCCTAA--------
WAVTCACCMTAASYDAAAAG
 A C G T A C G T A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C T G A T A C G G A C T G A T C T C G A G A T C G A T C T G C A G A C T T C G A C G T A A T C G A G T C C G A T C G T A C G T A G T C A C G T A C T A G

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTAACCCTAA-----
TTAACCCTTTVNKKN
 A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T G A C T C G T A G C T A G T A C G A T C G T A C G A C T A G C T A C G T T G A C C G T A C A G T A C G T A T G C

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTAACCCTAA
CTTAATCCC--
 A C G T A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTAACCCTAA
YTAATCCY--
 A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTAACCCTAA
NYTAATCCYB-
 A C G T A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTAACCCTAA
TTAATCCT--
 A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A
G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTAACCCTAA
TTCCCCCTAC
 A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTAACCCTAA
-TAATCCCN-
 A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A
A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CTAACCCTAA
TTAATCCC--
 A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T C G T A C G T A
G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T