Information for 4-TTTAACCAGGAC (Motif 4)

C A G T A G C T A C G T C G T A C G T A A G T C G T A C C G T A A C T G A C T G G T C A A G T C
Reverse Opposite:
C T A G A C G T G T A C A G T C A C G T A C T G C T A G A C G T C G A T C G T A C T G A G C T A
p-value:1e-14
log p-value:-3.429e+01
Information Content per bp:1.786
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif23.0
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets117.0 +/- 41.3bp
Average Position of motif in Background83.8 +/- 44.8bp
Strand Bias (log2 ratio + to - strand density)2.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACCAGGAC--
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T C A G T A G C T A C G T C G T A C G T A A G T C G T A C C G T A A C T G A C T G G T C A A G T C A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TTTAACCAGGAC
GTTAACTAGN--
 C A G T A G C T A C G T C G T A C G T A A G T C G T A C C G T A A C T G A C T G G T C A A G T C
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T A C G T

LBX1/MA0618.1/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TTTAACCAGGAC
-TTAATTAG---
 C A G T A G C T A C G T C G T A C G T A A G T C G T A C C G T A A C T G A C T G G T C A A G T C
A C G T C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TTTAACCAGGAC
NTTTTACGAGN--
 A C G T C A G T A G C T A C G T C G T A C G T A A G T C G T A C C G T A A C T G A C T G G T C A A G T C
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TTTAACCAGGAC-
AGCTGTTAACTAGCCGT
 A C G T A C G T A C G T A C G T C A G T A G C T A C G T C G T A C G T A A G T C G T A C C G T A A C T G A C T G G T C A A G T C A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACCAGGAC-
ANATTTTACGAGNNNN
 A C G T A C G T A C G T C A G T A G C T A C G T C G T A C G T A A G T C G T A C C G T A A C T G A C T G G T C A A G T C A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACCAGGAC-
NAATTTTACGAGNTNN
 A C G T A C G T A C G T C A G T A G C T A C G T C G T A C G T A A G T C G T A C C G T A A C T G A C T G G T C A A G T C A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

PB0081.1_Tcf1_1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TTTAACCAGGAC
ACTTAGTTAACTAAAAA
 A C G T A C G T A C G T A C G T A C G T C A G T A G C T A C G T C G T A C G T A A G T C G T A C C G T A A C T G A C T G G T C A A G T C
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

GSX1/MA0892.1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTTAACCAGGAC
NNTAATTAGN--
 C A G T A G C T A C G T C G T A C G T A A G T C G T A C C G T A A C T G A C T G G T C A A G T C
C G A T A G C T G C A T C G T A C G T A A G C T C A G T C T G A T A C G C A T G A C G T A C G T

mix-a/MA0621.1/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTTAACCAGGAC
AATTAATTAGT--
 A C G T C A G T A G C T A C G T C G T A C G T A A G T C G T A C C G T A A C T G A C T G G T C A A G T C
C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T A C G T A C G T