Information for 6-CATTTAAATGAG (Motif 6)

A G T C C G T A A C G T G A C T A C G T C G T A C G T A C G T A A C G T T A C G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C C G T A A C G T A C G T A C G T C G T A C G T A C G T A A C G T A C T G
p-value:1e-12
log p-value:-2.986e+01
Information Content per bp:1.926
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets103.0 +/- 37.0bp
Average Position of motif in Background122.4 +/- 39.6bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CATTTAAATGAG
-ATTTGAATT--
 A G T C C G T A A C G T G A C T A C G T C G T A C G T A C G T A A C G T T A C G C G T A A C T G
A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CATTTAAATGAG
WATGCAAATGAG
 A G T C C G T A A C G T G A C T A C G T C G T A C G T A C G T A A C G T T A C G C G T A A C T G
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CATTTAAATGAG
TATGCWAATBAV
 A G T C C G T A A C G T G A C T A C G T C G T A C G T A C G T A A C G T T A C G C G T A A C T G
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU1F1/MA0784.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CATTTAAATGAG
AATATGCAAATTAG
 A C G T A C G T A G T C C G T A A C G T G A C T A C G T C G T A C G T A C G T A A C G T T A C G C G T A A C T G
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CATTTAAATGAG
ATATGCAAATNNN
 A C G T A G T C C G T A A C G T G A C T A C G T C G T A C G T A C G T A A C G T T A C G C G T A A C T G
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PH0151.1_Pou6f1_1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CATTTAAATGAG-----
GACGATAATGAGCTTGC
 A G T C C G T A A C G T G A C T A C G T C G T A C G T A C G T A A C G T T A C G C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

POU6F2/MA0793.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CATTTAAATGAG--
----NTAATGAGCT
 A G T C C G T A A C G T G A C T A C G T C G T A C G T A C G T A A C G T T A C G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CATTTAAATGAG
NGCAATTAAA----
 A C G T A C G T A G T C C G T A A C G T G A C T A C G T C G T A C G T A C G T A A C G T T A C G C G T A A C T G
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CATTTAAATGAG
TATGCAAAT---
 A G T C C G T A A C G T G A C T A C G T C G T A C G T A C G T A A C G T T A C G C G T A A C T G
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CATTTAAATGAG-
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A G T C C G T A A C G T G A C T A C G T C G T A C G T A C G T A A C G T T A C G C G T A A C T G A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A