Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 883)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48252)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-31	-7.253e+01	0.0000	70.0	7.93%	632.1	1.31%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-23	-5.379e+01	0.0000	298.0	33.75%	9342.1	19.33%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-19	-4.554e+01	0.0000	70.0	7.93%	1020.2	2.11%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-18	-4.242e+01	0.0000	95.0	10.76%	1837.2	3.80%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-18	-4.185e+01	0.0000	163.0	18.46%	4303.6	8.91%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-9	-2.080e+01	0.0000	141.0	15.97%	4585.4	9.49%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-8	-1.951e+01	0.0000	105.0	11.89%	3153.0	6.52%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-7	-1.823e+01	0.0000	155.0	17.55%	5399.4	11.17%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-7	-1.619e+01	0.0000	40.0	4.53%	844.9	1.75%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-6	-1.533e+01	0.0000	36.0	4.08%	740.3	1.53%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-6	-1.524e+01	0.0000	195.0	22.08%	7533.9	15.59%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-6	-1.467e+01	0.0000	82.0	9.29%	2508.5	5.19%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-6	-1.452e+01	0.0000	211.0	23.90%	8379.1	17.34%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-6	-1.434e+01	0.0000	116.0	13.14%	3986.3	8.25%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-6	-1.425e+01	0.0000	18.0	2.04%	237.0	0.49%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-6	-1.382e+01	0.0000	76.0	8.61%	2316.0	4.79%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-5	-1.345e+01	0.0000	139.0	15.74%	5101.3	10.56%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-5	-1.344e+01	0.0000	69.0	7.81%	2053.8	4.25%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-5	-1.213e+01	0.0001	150.0	16.99%	5745.6	11.89%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-5	-1.180e+01	0.0002	45.0	5.10%	1199.0	2.48%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-5	-1.165e+01	0.0002	59.0	6.68%	1758.0	3.64%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-4	-1.115e+01	0.0003	76.0	8.61%	2499.3	5.17%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-4	-1.101e+01	0.0003	228.0	25.82%	9667.5	20.01%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-4	-1.100e+01	0.0003	199.0	22.54%	8234.2	17.04%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-4	-1.087e+01	0.0003	65.0	7.36%	2054.8	4.25%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-4	-1.061e+01	0.0004	75.0	8.49%	2497.0	5.17%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-4	-1.055e+01	0.0004	263.0	29.78%	11497.2	23.79%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4	-9.754e+00	0.0009	74.0	8.38%	2523.0	5.22%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-4	-9.608e+00	0.0010	35.0	3.96%	927.7	1.92%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-4	-9.506e+00	0.0011	62.0	7.02%	2025.9	4.19%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-4	-9.440e+00	0.0011	111.0	12.57%	4219.3	8.73%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-4	-9.305e+00	0.0012	94.0	10.65%	3453.3	7.15%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-8.505e+00	0.0026	106.0	12.00%	4090.3	8.46%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-3	-8.257e+00	0.0033	195.0	22.08%	8439.1	17.46%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-8.235e+00	0.0033	234.0	26.50%	10409.0	21.54%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-7.982e+00	0.0041	129.0	14.61%	5243.8	10.85%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-3	-7.571e+00	0.0060	79.0	8.95%	2945.1	6.09%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-7.546e+00	0.0060	25.0	2.83%	649.9	1.34%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-3	-7.442e+00	0.0064	334.0	37.83%	15749.8	32.59%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-3	-6.973e+00	0.0100	16.0	1.81%	350.9	0.73%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-2	-6.842e+00	0.0111	17.0	1.93%	389.5	0.81%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-6.733e+00	0.0121	136.0	15.40%	5761.0	11.92%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-2	-6.309e+00	0.0181	85.0	9.63%	3365.2	6.96%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-6.251e+00	0.0188	171.0	19.37%	7578.1	15.68%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-6.172e+00	0.0199	154.0	17.44%	6741.1	13.95%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-5.986e+00	0.0234	109.0	12.34%	4556.3	9.43%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-2	-5.825e+00	0.0269	82.0	9.29%	3284.3	6.80%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-2	-5.763e+00	0.0280	139.0	15.74%	6065.1	12.55%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-5.738e+00	0.0281	59.0	6.68%	2223.6	4.60%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-2	-5.583e+00	0.0322	73.0	8.27%	2890.1	5.98%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-2	-5.492e+00	0.0346	141.0	15.97%	6212.0	12.86%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-2	-5.468e+00	0.0347	187.0	21.18%	8539.2	17.67%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-2	-5.393e+00	0.0367	18.0	2.04%	487.8	1.01%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-2	-5.302e+00	0.0395	105.0	11.89%	4465.3	9.24%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-2	-5.143e+00	0.0455	99.0	11.21%	4197.3	8.69%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-5.041e+00	0.0494	14.0	1.59%	353.8	0.73%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-4.959e+00	0.0527	98.0	11.10%	4177.7	8.65%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-4.943e+00	0.0527	30.0	3.40%	1005.8	2.08%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-4.935e+00	0.0527	64.0	7.25%	2547.8	5.27%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-4.934e+00	0.0527	26.0	2.94%	836.2	1.73%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-2	-4.921e+00	0.0527	66.0	7.47%	2643.3	5.47%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-4.905e+00	0.0527	31.0	3.51%	1051.1	2.18%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-2	-4.834e+00	0.0540	102.0	11.55%	4393.1	9.09%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-4.819e+00	0.0540	329.0	37.26%	16119.5	33.36%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-4.816e+00	0.0540	11.0	1.25%	254.6	0.53%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-2	-4.770e+00	0.0550	23.0	2.60%	722.2	1.49%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-2	-4.768e+00	0.0550	218.0	24.69%	10290.1	21.29%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-2	-4.712e+00	0.0566	39.0	4.42%	1420.8	2.94%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-4.710e+00	0.0566	34.0	3.85%	1198.9	2.48%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-4.685e+00	0.0566	28.0	3.17%	939.4	1.94%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-2	-4.651e+00	0.0576	38.0	4.30%	1381.4	2.86%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-4.621e+00	0.0585	177.0	20.05%	8210.0	16.99%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-4.566e+00	0.0609	182.0	20.61%	8478.2	17.55%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-4.561e+00	0.0609	23.0	2.60%	736.8	1.52%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-4.273e+00	0.0795	106.0	12.00%	4688.9	9.70%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-4.244e+00	0.0808	127.0	14.38%	5746.7	11.89%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-1	-4.225e+00	0.0813	36.0	4.08%	1332.9	2.76%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.203e+00	0.0820	41.0	4.64%	1562.5	3.23%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-4.151e+00	0.0854	46.0	5.21%	1799.6	3.72%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-4.149e+00	0.0854	9.0	1.02%	208.4	0.43%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-4.058e+00	0.0913	83.0	9.40%	3588.9	7.43%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-4.018e+00	0.0938	85.0	9.63%	3693.9	7.64%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-4.009e+00	0.0938	39.0	4.42%	1491.4	3.09%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-3.967e+00	0.0964	20.0	2.27%	651.0	1.35%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-3.960e+00	0.0964	79.0	8.95%	3408.2	7.05%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-1	-3.893e+00	0.1015	117.0	13.25%	5313.7	11.00%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.884e+00	0.1015	66.0	7.47%	2786.6	5.77%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.861e+00	0.1023	43.0	4.87%	1693.1	3.50%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-3.859e+00	0.1023	115.0	13.02%	5219.1	10.80%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-3.813e+00	0.1050	114.0	12.91%	5178.9	10.72%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.617e+00	0.1264	100.0	11.33%	4513.0	9.34%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.532e+00	0.1361	67.0	7.59%	2890.3	5.98%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.528e+00	0.1361	242.0	27.41%	11881.9	24.59%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.511e+00	0.1361	17.0	1.93%	556.8	1.15%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.419e+00	0.1476	69.0	7.81%	3007.8	6.22%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-3.338e+00	0.1583	87.0	9.85%	3916.1	8.10%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-3.293e+00	0.1639	38.0	4.30%	1527.9	3.16%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-3.284e+00	0.1639	27.0	3.06%	1018.0	2.11%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.228e+00	0.1714	56.0	6.34%	2401.0	4.97%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-3.219e+00	0.1714	60.0	6.80%	2598.0	5.38%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.211e+00	0.1714	145.0	16.42%	6901.3	14.28%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.169e+00	0.1765	471.0	53.34%	24344.7	50.38%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-3.090e+00	0.1890	55.0	6.23%	2374.3	4.91%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.029e+00	0.1990	4.0	0.45%	74.9	0.15%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.022e+00	0.1990	8.0	0.91%	217.9	0.45%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.002e+00	0.2007	41.0	4.64%	1708.6	3.54%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-3.000e+00	0.2007	57.0	6.46%	2487.8	5.15%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.974e+00	0.2026	45.0	5.10%	1905.1	3.94%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.968e+00	0.2026	116.0	13.14%	5469.4	11.32%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.911e+00	0.2118	28.0	3.17%	1103.6	2.28%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-2.847e+00	0.2238	192.0	21.74%	9458.9	19.57%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.781e+00	0.2368	65.0	7.36%	2923.2	6.05%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.766e+00	0.2382	81.0	9.17%	3731.8	7.72%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.750e+00	0.2401	12.0	1.36%	396.9	0.82%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.736e+00	0.2413	147.0	16.65%	7135.2	14.77%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.728e+00	0.2413	55.0	6.23%	2435.0	5.04%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-2.715e+00	0.2422	409.0	46.32%	21140.1	43.75%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.681e+00	0.2484	56.0	6.34%	2493.1	5.16%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e-1	-2.666e+00	0.2500	19.0	2.15%	713.9	1.48%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-1	-2.622e+00	0.2591	6.0	0.68%	158.2	0.33%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.603e+00	0.2619	20.0	2.27%	765.4	1.58%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-2.595e+00	0.2619	100.0	11.33%	4740.9	9.81%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-1	-2.513e+00	0.2819	117.0	13.25%	5639.3	11.67%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.474e+00	0.2907	27.0	3.06%	1108.1	2.29%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-1	-2.434e+00	0.3002	54.0	6.12%	2439.2	5.05%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.431e+00	0.3002	149.0	16.87%	7333.0	15.18%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.394e+00	0.3053	12.0	1.36%	422.5	0.87%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.394e+00	0.3053	12.0	1.36%	422.5	0.87%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.329e+00	0.3230	64.0	7.25%	2964.9	6.14%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-2.303e+00	0.3292	132.0	14.95%	6482.7	13.42%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-2.296e+00	0.3292	185.0	20.95%	9275.1	19.19%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.182e+00	0.3658	36.0	4.08%	1588.3	3.29%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.174e+00	0.3658	55.0	6.23%	2541.5	5.26%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.129e+00	0.3798	17.0	1.93%	675.1	1.40%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.124e+00	0.3798	282.0	31.94%	14526.6	30.06%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.120e+00	0.3798	53.0	6.00%	2451.2	5.07%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.110e+00	0.3798	73.0	8.27%	3474.2	7.19%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.103e+00	0.3798	12.0	1.36%	446.3	0.92%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.101e+00	0.3798	101.0	11.44%	4925.7	10.19%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.081e+00	0.3817	23.0	2.60%	967.2	2.00%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.072e+00	0.3823	8.0	0.91%	270.9	0.56%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.060e+00	0.3843	157.0	17.78%	7879.4	16.31%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.048e+00	0.3862	43.0	4.87%	1961.3	4.06%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.043e+00	0.3862	292.0	33.07%	15101.1	31.25%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.031e+00	0.3871	103.0	11.66%	5050.9	10.45%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.000e+00	0.3968	32.0	3.62%	1420.8	2.94%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.998e+00	0.3968	96.0	10.87%	4695.7	9.72%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.969e+00	0.4036	21.0	2.38%	885.9	1.83%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.948e+00	0.4095	97.0	10.99%	4762.6	9.86%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.944e+00	0.4095	36.0	4.08%	1629.1	3.37%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.943e+00	0.4095	134.0	15.18%	6706.6	13.88%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.911e+00	0.4163	45.0	5.10%	2089.3	4.32%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.901e+00	0.4179	148.0	16.76%	7461.8	15.44%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.881e+00	0.4235	26.0	2.94%	1142.5	2.36%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.875e+00	0.4235	14.0	1.59%	561.3	1.16%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.842e+00	0.4350	87.0	9.85%	4272.9	8.84%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.835e+00	0.4351	38.0	4.30%	1750.5	3.62%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.831e+00	0.4351	2.0	0.23%	39.5	0.08%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.813e+00	0.4390	6.0	0.68%	200.1	0.41%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.803e+00	0.4410	10.0	1.13%	382.0	0.79%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.802e+00	0.4410	32.0	3.62%	1454.1	3.01%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.724e+00	0.4712	173.0	19.59%	8861.7	18.34%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.720e+00	0.4712	89.0	10.08%	4414.6	9.14%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.713e+00	0.4712	62.0	7.02%	3008.0	6.22%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.702e+00	0.4731	28.0	3.17%	1271.1	2.63%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.676e+00	0.4823	21.0	2.38%	926.2	1.92%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.674e+00	0.4823	161.0	18.23%	8242.7	17.06%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.667e+00	0.4823	28.0	3.17%	1278.0	2.64%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.635e+00	0.4937	13.0	1.47%	540.1	1.12%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-1.623e+00	0.4966	4.0	0.45%	125.1	0.26%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.612e+00	0.4992	49.0	5.55%	2361.5	4.89%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.602e+00	0.5012	10.0	1.13%	400.4	0.83%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.584e+00	0.5077	13.0	1.47%	546.5	1.13%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.574e+00	0.5095	35.0	3.96%	1650.9	3.42%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.570e+00	0.5095	25.0	2.83%	1143.9	2.37%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.542e+00	0.5202	3.0	0.34%	87.9	0.18%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.525e+00	0.5263	117.0	13.25%	5961.7	12.34%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.504e+00	0.5345	147.0	16.65%	7568.5	15.66%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.501e+00	0.5345	54.0	6.12%	2649.1	5.48%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.500e+00	0.5345	94.0	10.65%	4751.7	9.83%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.498e+00	0.5345	164.0	18.57%	8480.4	17.55%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.456e+00	0.5484	123.0	13.93%	6308.3	13.05%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.440e+00	0.5542	96.0	10.87%	4879.5	10.10%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.423e+00	0.5607	6.0	0.68%	229.0	0.47%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.411e+00	0.5640	7.0	0.79%	276.7	0.57%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.403e+00	0.5655	159.0	18.01%	8256.3	17.09%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.392e+00	0.5690	66.0	7.47%	3310.5	6.85%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.324e+00	0.6056	16.0	1.81%	730.5	1.51%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.320e+00	0.6056	1.0	0.11%	17.5	0.04%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-1.311e+00	0.6071	142.0	16.08%	7388.3	15.29%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.300e+00	0.6107	5.0	0.57%	191.6	0.40%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.278e+00	0.6211	30.0	3.40%	1457.7	3.02%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.269e+00	0.6237	173.0	19.59%	9076.5	18.78%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.239e+00	0.6393	6.0	0.68%	244.2	0.51%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.235e+00	0.6393	4.0	0.45%	149.3	0.31%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.224e+00	0.6424	85.0	9.63%	4377.4	9.06%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.217e+00	0.6436	102.0	11.55%	5288.4	10.94%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.212e+00	0.6436	19.0	2.15%	902.2	1.87%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.189e+00	0.6551	100.0	11.33%	5193.4	10.75%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.180e+00	0.6576	19.0	2.15%	908.2	1.88%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.160e+00	0.6677	38.0	4.30%	1906.0	3.94%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.144e+00	0.6718	11.0	1.25%	504.4	1.04%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.144e+00	0.6718	11.0	1.25%	504.4	1.04%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.141e+00	0.6718	48.0	5.44%	2439.8	5.05%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.135e+00	0.6718	99.0	11.21%	5163.5	10.69%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.101e+00	0.6912	98.0	11.10%	5125.4	10.61%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.094e+00	0.6925	48.0	5.44%	2454.2	5.08%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.074e+00	0.7028	10.0	1.13%	463.0	0.96%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.064e+00	0.7063	45.0	5.10%	2304.4	4.77%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.063e+00	0.7063	32.0	3.62%	1615.9	3.34%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.061e+00	0.7063	49.0	5.55%	2518.2	5.21%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.041e+00	0.7128	30.0	3.40%	1515.6	3.14%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.028e+00	0.7186	38.0	4.30%	1943.6	4.02%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.019e+00	0.7217	70.0	7.93%	3657.4	7.57%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.013e+00	0.7227	18.0	2.04%	889.9	1.84%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.001e+00	0.7286	137.0	15.52%	7279.4	15.06%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.000e+00	0.7286	20.0	2.27%	997.0	2.06%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-9.989e-01	0.7286	21.0	2.38%	1050.7	2.17%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-9.878e-01	0.7286	6.0	0.68%	270.1	0.56%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-9.710e-01	0.7367	62.0	7.02%	3247.5	6.72%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-9.314e-01	0.7630	57.0	6.46%	2994.4	6.20%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-9.083e-01	0.7774	46.0	5.21%	2411.1	4.99%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-9.019e-01	0.7789	141.0	15.97%	7554.5	15.63%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-8.962e-01	0.7798	149.0	16.87%	7992.9	16.54%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-8.908e-01	0.7806	7.0	0.79%	334.8	0.69%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-8.887e-01	0.7806	48.0	5.44%	2526.9	5.23%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.601e-01	0.7978	114.0	12.91%	6113.9	12.65%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-8.600e-01	0.7978	242.0	27.41%	13080.7	27.07%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-8.586e-01	0.7978	67.0	7.59%	3565.7	7.38%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-8.476e-01	0.7978	9.0	1.02%	446.7	0.92%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-8.473e-01	0.7978	5.0	0.57%	235.8	0.49%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-8.380e-01	0.7980	1.0	0.11%	31.2	0.06%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-8.097e-01	0.8174	77.0	8.72%	4131.3	8.55%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.045e-01	0.8182	178.0	20.16%	9633.5	19.94%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-7.861e-01	0.8298	214.0	24.24%	11611.9	24.03%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-7.848e-01	0.8298	13.0	1.47%	672.4	1.39%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-7.841e-01	0.8298	9.0	1.02%	457.0	0.95%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-7.841e-01	0.8298	9.0	1.02%	457.5	0.95%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.743e-01	0.8298	8.0	0.91%	405.8	0.84%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-7.669e-01	0.8298	205.0	23.22%	11135.2	23.04%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.577e-01	0.8325	19.0	2.15%	1003.9	2.08%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-7.495e-01	0.8358	1.0	0.11%	35.9	0.07%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-7.235e-01	0.8544	3.0	0.34%	143.6	0.30%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.232e-01	0.8544	22.0	2.49%	1176.9	2.44%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.138e-01	0.8556	24.0	2.72%	1288.1	2.67%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.103e-01	0.8556	15.0	1.70%	798.4	1.65%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-7.072e-01	0.8556	43.0	4.87%	2328.7	4.82%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-6.997e-01	0.8573	17.0	1.93%	910.7	1.88%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.854e-01	0.8661	21.0	2.38%	1133.7	2.35%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-6.762e-01	0.8706	14.0	1.59%	752.2	1.56%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-6.731e-01	0.8706	84.0	9.51%	4589.1	9.50%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.723e-01	0.8706	14.0	1.59%	753.9	1.56%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-6.483e-01	0.8846	45.0	5.10%	2464.2	5.10%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.213e-01	0.9053	47.0	5.32%	2587.0	5.35%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.182e-01	0.9053	9.0	1.02%	490.7	1.02%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-6.161e-01	0.9053	23.0	2.60%	1266.7	2.62%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.115e-01	0.9053	66.0	7.47%	3639.0	7.53%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.936e-01	0.9163	15.0	1.70%	830.0	1.72%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.747e-01	0.9302	60.0	6.80%	3329.7	6.89%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.583e-01	0.9419	122.0	13.82%	6758.9	13.99%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.551e-01	0.9419	21.0	2.38%	1177.1	2.44%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.463e-01	0.9460	30.0	3.40%	1682.6	3.48%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.456e-01	0.9460	9.0	1.02%	507.3	1.05%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-5.411e-01	0.9460	217.0	24.58%	11998.9	24.83%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.379e-01	0.9460	78.0	8.83%	4347.6	9.00%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-5.267e-01	0.9502	118.0	13.36%	6564.5	13.58%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-5.115e-01	0.9612	71.0	8.04%	3978.3	8.23%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.888e-01	0.9796	10.0	1.13%	579.1	1.20%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-4.841e-01	0.9805	247.0	27.97%	13710.6	28.37%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-4.828e-01	0.9805	23.0	2.60%	1318.7	2.73%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.643e-01	0.9927	58.0	6.57%	3288.5	6.81%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.517e-01	1.0000	18.0	2.04%	1048.3	2.17%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.466e-01	1.0000	45.0	5.10%	2573.3	5.33%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-4.435e-01	1.0000	53.0	6.00%	3023.1	6.26%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-4.412e-01	1.0000	5.0	0.57%	301.9	0.62%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-4.309e-01	1.0000	25.0	2.83%	1455.4	3.01%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-4.268e-01	1.0000	47.0	5.32%	2698.6	5.58%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-4.207e-01	1.0000	60.0	6.80%	3431.1	7.10%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.148e-01	1.0000	202.0	22.88%	11316.2	23.42%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.013e-01	1.0000	17.0	1.93%	1012.7	2.10%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.013e-01	1.0000	13.0	1.47%	781.2	1.62%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-3.869e-01	1.0000	5.0	0.57%	314.5	0.65%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-3.860e-01	1.0000	16.0	1.81%	961.0	1.99%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.819e-01	1.0000	49.0	5.55%	2842.5	5.88%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-3.809e-01	1.0000	157.0	17.78%	8869.2	18.35%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.768e-01	1.0000	17.0	1.93%	1023.2	2.12%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-3.726e-01	1.0000	73.0	8.27%	4199.5	8.69%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.678e-01	1.0000	36.0	4.08%	2116.8	4.38%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.675e-01	1.0000	137.0	15.52%	7775.0	16.09%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-3.603e-01	1.0000	5.0	0.57%	321.9	0.67%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-3.416e-01	1.0000	15.0	1.70%	923.0	1.91%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.396e-01	1.0000	30.0	3.40%	1792.5	3.71%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.345e-01	1.0000	213.0	24.12%	12033.6	24.90%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.341e-01	1.0000	18.0	2.04%	1102.0	2.28%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.244e-01	1.0000	35.0	3.96%	2090.0	4.33%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.188e-01	1.0000	1.0	0.11%	71.4	0.15%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.154e-01	1.0000	5.0	0.57%	334.7	0.69%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.076e-01	1.0000	62.0	7.02%	3640.5	7.53%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.964e-01	1.0000	3.0	0.34%	212.7	0.44%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.953e-01	1.0000	284.0	32.16%	16019.0	33.15%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.939e-01	1.0000	48.0	5.44%	2857.2	5.91%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.932e-01	1.0000	14.0	1.59%	888.3	1.84%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.707e-01	1.0000	12.0	1.36%	780.3	1.61%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.696e-01	1.0000	20.0	2.27%	1257.5	2.60%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.668e-01	1.0000	26.0	2.94%	1611.3	3.33%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-2.631e-01	1.0000	2.0	0.23%	153.8	0.32%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.622e-01	1.0000	64.0	7.25%	3801.6	7.87%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.619e-01	1.0000	76.0	8.61%	4483.5	9.28%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-2.617e-01	1.0000	41.0	4.64%	2485.1	5.14%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.551e-01	1.0000	2.0	0.23%	155.2	0.32%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.547e-01	1.0000	70.0	7.93%	4151.3	8.59%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-2.536e-01	1.0000	115.0	13.02%	6696.0	13.86%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.532e-01	1.0000	54.0	6.12%	3240.8	6.71%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.526e-01	1.0000	1.0	0.11%	82.9	0.17%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.506e-01	1.0000	85.0	9.63%	5007.9	10.36%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-2.478e-01	1.0000	47.0	5.32%	2844.4	5.89%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-2.320e-01	1.0000	17.0	1.93%	1104.9	2.29%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.265e-01	1.0000	27.0	3.06%	1702.5	3.52%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.261e-01	1.0000	5.0	0.57%	366.3	0.76%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-2.231e-01	1.0000	1.0	0.11%	88.7	0.18%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.231e-01	1.0000	1.0	0.11%	88.2	0.18%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-2.201e-01	1.0000	73.0	8.27%	4366.9	9.04%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.163e-01	1.0000	27.0	3.06%	1711.7	3.54%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.119e-01	1.0000	27.0	3.06%	1715.6	3.55%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-2.049e-01	1.0000	100.0	11.33%	5924.1	12.26%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.008e-01	1.0000	17.0	1.93%	1127.3	2.33%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.949e-01	1.0000	5.0	0.57%	380.6	0.79%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.940e-01	1.0000	8.0	0.91%	575.1	1.19%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.908e-01	1.0000	65.0	7.36%	3949.9	8.17%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.895e-01	1.0000	152.0	17.21%	8886.8	18.39%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.878e-01	1.0000	84.0	9.51%	5042.1	10.43%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.859e-01	1.0000	1.0	0.11%	97.5	0.20%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.789e-01	1.0000	370.0	41.90%	21010.6	43.48%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.751e-01	1.0000	5.0	0.57%	390.8	0.81%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.712e-01	1.0000	87.0	9.85%	5242.9	10.85%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.652e-01	1.0000	133.0	15.06%	7867.4	16.28%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.560e-01	1.0000	6.0	0.68%	468.6	0.97%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.520e-01	1.0000	34.0	3.85%	2196.6	4.55%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.495e-01	1.0000	58.0	6.57%	3609.7	7.47%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.491e-01	1.0000	15.0	1.70%	1049.4	2.17%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.491e-01	1.0000	380.0	43.04%	21647.5	44.80%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.462e-01	1.0000	68.0	7.70%	4195.2	8.68%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.455e-01	1.0000	108.0	12.23%	6492.0	13.43%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.435e-01	1.0000	19.0	2.15%	1302.4	2.70%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.411e-01	1.0000	5.0	0.57%	410.8	0.85%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.353e-01	1.0000	1.0	0.11%	113.9	0.24%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.270e-01	1.0000	61.0	6.91%	3825.7	7.92%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.236e-01	1.0000	72.0	8.15%	4472.9	9.26%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.210e-01	1.0000	49.0	5.55%	3133.8	6.49%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.210e-01	1.0000	5.0	0.57%	424.2	0.88%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.193e-01	1.0000	8.0	0.91%	629.2	1.30%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.153e-01	1.0000	198.0	22.42%	11663.5	24.14%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.110e-01	1.0000	81.0	9.17%	5023.8	10.40%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.104e-01	1.0000	29.0	3.28%	1957.0	4.05%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.065e-01	1.0000	55.0	6.23%	3516.9	7.28%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.042e-01	1.0000	37.0	4.19%	2451.0	5.07%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-9.935e-02	1.0000	52.0	5.89%	3355.4	6.94%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-9.630e-02	1.0000	7.0	0.79%	584.7	1.21%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-9.594e-02	1.0000	140.0	15.86%	8452.5	17.49%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.499e-02	1.0000	204.0	23.10%	12074.1	24.99%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-9.318e-02	1.0000	18.0	2.04%	1305.3	2.70%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-9.000e-02	1.0000	63.0	7.13%	4027.8	8.34%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-8.871e-02	1.0000	4.0	0.45%	379.2	0.78%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-8.653e-02	1.0000	5.0	0.57%	454.7	0.94%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-7.888e-02	1.0000	8.0	0.91%	673.2	1.39%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-7.571e-02	1.0000	62.0	7.02%	4009.2	8.30%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.297e-02	1.0000	5.0	0.57%	469.8	0.97%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-7.227e-02	1.0000	30.0	3.40%	2093.1	4.33%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-7.221e-02	1.0000	49.0	5.55%	3246.9	6.72%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.866e-02	1.0000	29.0	3.28%	2041.0	4.22%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.985e-02	1.0000	69.0	7.81%	4478.3	9.27%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.945e-02	1.0000	20.0	2.27%	1497.8	3.10%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-5.296e-02	1.0000	2.0	0.23%	257.2	0.53%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-5.261e-02	1.0000	31.0	3.51%	2209.3	4.57%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.181e-02	1.0000	9.0	1.02%	786.6	1.63%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-5.067e-02	1.0000	21.0	2.38%	1584.1	3.28%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-4.804e-02	1.0000	192.0	21.74%	11636.3	24.08%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.676e-02	1.0000	2.0	0.23%	265.7	0.55%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-3.598e-02	1.0000	262.0	29.67%	15679.7	32.45%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-3.546e-02	1.0000	76.0	8.61%	5014.7	10.38%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.315e-02	1.0000	2.0	0.23%	287.8	0.60%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-3.260e-02	1.0000	87.0	9.85%	5686.6	11.77%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.247e-02	1.0000	161.0	18.23%	9990.2	20.67%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.246e-02	1.0000	24.0	2.72%	1841.2	3.81%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.064e-02	1.0000	2.0	0.23%	292.5	0.61%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.964e-02	1.0000	193.0	21.86%	11846.4	24.52%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.832e-02	1.0000	2.0	0.23%	297.8	0.62%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.674e-02	1.0000	124.0	14.04%	7906.3	16.36%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.104e-02	1.0000	40.0	4.53%	2925.8	6.05%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.886e-02	1.0000	27.0	3.06%	2113.7	4.37%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.771e-02	1.0000	78.0	8.83%	5285.7	10.94%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.727e-02	1.0000	3.0	0.34%	421.5	0.87%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.518e-02	1.0000	26.0	2.94%	2078.3	4.30%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.449e-02	1.0000	27.0	3.06%	2150.8	4.45%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.367e-02	1.0000	67.0	7.59%	4671.1	9.67%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.336e-02	1.0000	35.0	3.96%	2681.0	5.55%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.169e-02	1.0000	3.0	0.34%	448.9	0.93%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.103e-02	1.0000	3.0	0.34%	452.2	0.94%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.002e-02	1.0000	59.0	6.68%	4237.7	8.77%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-8.461e-03	1.0000	100.0	11.33%	6761.4	13.99%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-7.312e-03	1.0000	5.0	0.57%	657.2	1.36%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.529e-03	1.0000	4.0	0.45%	579.5	1.20%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-5.900e-03	1.0000	9.0	1.02%	996.9	2.06%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-5.652e-03	1.0000	89.0	10.08%	6182.0	12.79%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-3.685e-03	1.0000	12.0	1.36%	1268.5	2.63%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-3.465e-03	1.0000	35.0	3.96%	2873.0	5.95%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.930e-03	1.0000	59.0	6.68%	4445.9	9.20%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-2.547e-03	1.0000	12.0	1.36%	1303.8	2.70%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.501e-03	1.0000	3.0	0.34%	585.8	1.21%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.200e-03	1.0000	233.0	26.39%	14976.3	30.99%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.490e-04	1.0000	1.0	0.11%	400.4	0.83%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-3.330e-04	1.0000	22.0	2.49%	2248.3	4.65%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.670e-04	1.0000	25.0	2.83%	2538.2	5.25%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-3.000e-05	1.0000	332.0	37.60%	21364.2	44.21%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.000e-06	1.0000	92.0	10.42%	7511.9	15.55%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-3.000e-06	1.0000	52.0	5.89%	4868.2	10.07%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.000e-06	1.0000	38.0	4.30%	3961.5	8.20%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.000e-06	1.0000	33.0	3.74%	3599.9	7.45%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-0.000e+00	1.0000	102.0	11.55%	8609.1	17.82%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-0.000e+00	1.0000	65.0	7.36%	6181.7	12.79%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	106.0	12.00%	9004.4	18.63%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	11.9	0.02%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	96.0	0.20%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	79.3	0.16%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	10.0	0.02%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	29.1	0.06%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	117.0	0.24%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	29.7	0.06%