Information for 9-ATAAACCG (Motif 17)

C G T A C G A T C G T A G C T A C T G A T A G C T G A C T A C G
Reverse Opposite:
A T G C A C T G A T C G G A C T C G A T G C A T G C T A G C A T
p-value:1e-10
log p-value:-2.468e+01
Information Content per bp:1.591
Number of Target Sequences with motif239.0
Percentage of Target Sequences with motif23.50%
Number of Background Sequences with motif7398.5
Percentage of Background Sequences with motif15.51%
Average Position of motif in Targets97.2 +/- 56.7bp
Average Position of motif in Background99.7 +/- 63.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----ATAAACCG
NGYCATAAAWCH
 A C G T A C G T A C G T A C G T C G T A C G A T C G T A G C T A C T G A T A G C T G A C T A C G
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX1/MA0878.1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---ATAAACCG
GCAATAAAA--
 A C G T A C G T A C G T C G T A C G A T C G T A G C T A C T G A T A G C T G A C T A C G
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--ATAAACCG-----
CNATAATCCGNTTNT
 A C G T A C G T C G T A C G A T C G T A G C T A C T G A T A G C T G A C T A C G A C G T A C G T A C G T A C G T A C G T
T A G C C T G A G C T A C G A T C G T A C G T A A C G T G T A C A G T C A T C G G A C T C G A T G A C T C G A T C A G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ATAAACCG
WWATRTAAACAN
 A C G T A C G T A C G T A C G T C G T A C G A T C G T A G C T A C T G A T A G C T G A C T A C G
G C A T G C A T C T G A A C G T C T G A A C G T C G T A C G T A C G T A A G T C G T C A G T C A

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ATAAACCG---
-NHAACBGYYV
 C G T A C G A T C G T A G C T A C T G A T A G C T G A C T A C G A C G T A C G T A C G T
A C G T A G T C G C A T C G T A C G T A G T A C A C G T A C T G G A T C G A T C T C G A

OTX1/MA0711.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ATAAACCG
TTAATCCG
 C G T A C G A T C G T A G C T A C T G A T A G C T G A C T A C G
G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:7
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:ATAAACCG---
---AACCGANA
 C G T A C G A T C G T A G C T A C T G A T A G C T G A C T A C G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G T A T A G C A G T C C T A G G C T A G T A C G C T A

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ATAAACCG
CCAATAAAAA-
 A C G T A C G T A C G T C G T A C G A T C G T A G C T A C T G A T A G C T G A C T A C G
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-ATAAACCG--
AATAAACAATN
 A C G T C G T A C G A T C G T A G C T A C T G A T A G C T G A C T A C G A C G T A C G T
G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---ATAAACCG
GTCATAAAAN-
 A C G T A C G T A C G T C G T A C G A T C G T A G C T A C T G A T A G C T G A C T A C G
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T