Information for 18-CRTCAGACTA (Motif 24)

T A G C T C G A A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A
Reverse Opposite:
C G A T C G T A C T A G A C G T G T A C A C G T C T A G G T C A A G C T A T C G
p-value:1e-9
log p-value:-2.158e+01
Information Content per bp:1.761
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif5.90%
Number of Background Sequences with motif1142.3
Percentage of Background Sequences with motif2.39%
Average Position of motif in Targets91.9 +/- 58.4bp
Average Position of motif in Background104.0 +/- 61.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:CRTCAGACTA
--BCAGACWA
 T A G C T C G A A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CRTCAGACTA--
--CCAGACRSVB
 T A G C T C G A A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C G T A C G T
A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CRTCAGACTA
--CCAGACAG
 T A G C T C G A A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

POL002.1_INR/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CRTCAGACTA
--TCAGTCTT
 T A G C T C G A A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A
A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CRTCAGACTA----
CAAATCCAGACATCACA
 A C G T A C G T A C G T T A G C T C G A A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CRTCAGACTA
AGGTGHCAGACA-
 A C G T A C G T A C G T T A G C T C G A A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------CRTCAGACTA
AGAGRRACAGCWGAC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C G A A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CRTCAGACTA
ATGCCAGACN-
 A C G T T A G C T C G A A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CRTCAGACTA-
TAATCHGATTAC
 A C G T T A G C T C G A A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C G T
G C A T C T G A T G C A G A C T A G T C G T A C T C A G C G T A A G C T A C G T G C T A G T A C

PB0203.1_Zfp691_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CRTCAGACTA-------
TACGAGACTCCTCTAAC
 T A G C T C G A A C G T A G T C C G T A A C T G C G T A A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C