Information for 7-GGCTGTAAAT (Motif 7)

C T A G A T C G G T A C G C A T A C T G A C G T C T G A T G C A C G T A G C A T
Reverse Opposite:
C G T A G C A T A C G T G A C T T G C A T A G C C G T A C A T G T A G C G A T C
p-value:1e-14
log p-value:-3.230e+01
Information Content per bp:1.541
Number of Target Sequences with motif521.0
Percentage of Target Sequences with motif51.23%
Number of Background Sequences with motif18754.0
Percentage of Background Sequences with motif39.31%
Average Position of motif in Targets102.6 +/- 55.1bp
Average Position of motif in Background100.5 +/- 62.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----GGCTGTAAAT---
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C G T C T A G A T C G G T A C G C A T A C T G A C G T C T G A T G C A C G T A G C A T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----GGCTGTAAAT---
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T C T A G A T C G G T A C G C A T A C T G A C G T C T G A T G C A C G T A G C A T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:3
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----GGCTGTAAAT---
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T C T A G A T C G G T A C G C A T A C T G A C G T C T G A T G C A C G T A G C A T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0141.1_Pknox2/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GGCTGTAAAT--
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T C T A G A T C G G T A C G C A T A C T G A C G T C T G A T G C A C G T A G C A T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

Hoxc9/MA0485.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGCTGTAAAT---
GGCCATAAATCAC
 C T A G A T C G G T A C G C A T A C T G A C G T C T G A T G C A C G T A G C A T A C G T A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GGCTGTAAAT
-GCTGTCAA-
 C T A G A T C G G T A C G C A T A C T G A C G T C T G A T G C A C G T A G C A T
A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----GGCTGTAAAT---
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T C T A G A T C G G T A C G C A T A C T G A C G T C T G A T G C A C G T A G C A T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGCTGTAAAT--
NGYCATAAAWCH
 C T A G A T C G G T A C G C A T A C T G A C G T C T G A T G C A C G T A G C A T A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GGCTGTAAAT--
AACTAGCTGTCAATAC
 A C G T A C G T A C G T A C G T C T A G A T C G G T A C G C A T A C T G A C G T C T G A T G C A C G T A G C A T A C G T A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GGCTGTAAAT--
GGCCATAAATCA
 C T A G A T C G G T A C G C A T A C T G A C G T C T G A T G C A C G T A G C A T A C G T A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A