Information for 5-TGGGCTTGCCAA (Motif 9)

C G A T A C T G C T A G C T A G G A T C A C G T C A G T A C T G A T G C G A T C G T C A T C G A
Reverse Opposite:
A G C T C A G T C T A G A T C G G T A C G T C A C G T A C T A G G A T C G A T C T G A C G C T A
p-value:1e-13
log p-value:-3.182e+01
Information Content per bp:1.633
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif9.14%
Number of Background Sequences with motif1803.3
Percentage of Background Sequences with motif3.78%
Average Position of motif in Targets98.2 +/- 50.8bp
Average Position of motif in Background98.8 +/- 65.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:TGGGCTTGCCAA
----CTTGGCAA
 C G A T A C T G C T A G C T A G G A T C A C G T C A G T A C T G A T G C G A T C G T C A T C G A
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIC/MA0161.2/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TGGGCTTGCCAA-
--TACTTGGCAGA
 C G A T A C T G C T A G C T A G G A T C A C G T C A G T A C T G A T G C G A T C G T C A T C G A A C G T
A C G T A C G T G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGGGCTTGCCAA
GGGGATTTCC--
 C G A T A C T G C T A G C T A G G A T C A C G T C A G T A C T G A T G C G A T C G T C A T C G A
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGGGCTTGCCAA-
---NNTTGGCANN
 C G A T A C T G C T A G C T A G G A T C A C G T C A G T A C T G A T G C G A T C G T C A T C G A A C G T
A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGGCTTGCCAA
GGGAATTTCC--
 C G A T A C T G C T A G C T A G G A T C A C G T C A G T A C T G A T G C G A T C G T C A T C G A
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGGCTTGCCAA
GGGGATTTCC--
 C G A T A C T G C T A G C T A G G A T C A C G T C A G T A C T G A T G C G A T C G T C A T C G A
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TGGGCTTGCCAA-
----CGTGCCAAG
 C G A T A C T G C T A G C T A G G A T C A C G T C A G T A C T G A T G C G A T C G T C A T C G A A C G T
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGGGCTTGCCAA
BNTGDCCTTG----
 A C G T A C G T C G A T A C T G C T A G C T A G G A T C A C G T C A G T A C T G A T G C G A T C G T C A T C G A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGGGCTTGCCAA
NNATTGGACTTTNGNN
 A C G T A C G T A C G T A C G T C G A T A C T G C T A G C T A G G A T C A C G T C A G T A C T G A T G C G A T C G T C A T C G A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:TGGGCTTGCCAA-
---ATTTTCCATT
 C G A T A C T G C T A G C T A G G A T C A C G T C A G T A C T G A T G C G A T C G T C A T C G A A C G T
A C G T A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T