Information for 12-RGGCCMTGAA (Motif 12)

C T A G A T C G A C T G A T G C G T A C G T A C A C G T C T A G C G T A G T C A
Reverse Opposite:
C A G T C G A T A G T C C G T A A C T G C A T G A T C G G T A C T A G C A G T C
p-value:1e-8
log p-value:-2.037e+01
Information Content per bp:1.720
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif1232.5
Percentage of Background Sequences with motif2.53%
Average Position of motif in Targets112.4 +/- 56.3bp
Average Position of motif in Background98.5 +/- 61.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:RGGCCMTGAA-
-GGCMATGAAA
 C T A G A T C G A C T G A T G C G T A C G T A C A C G T C T A G C G T A G T C A A C G T
A C G T C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:RGGCCMTGAA-
-RGCAATNAAA
 C T A G A T C G A C T G A T G C G T A C G T A C A C G T C T A G C G T A G T C A A C G T
A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:RGGCCMTGAA-
-VGCCATAAAA
 C T A G A T C G A C T G A T G C G T A C G T A C A C G T C T A G C G T A G T C A A C G T
A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:RGGCCMTGAA-
-KGCCATAAAA
 C T A G A T C G A C T G A T G C G T A C G T A C A C G T C T A G C G T A G T C A A C G T
A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.71
Offset:1
Orientation:forward strand
Alignment:RGGCCMTGAA-
-GGYAATGAAA
 C T A G A T C G A C T G A T G C G T A C G T A C A C G T C T A G C G T A G T C A A C G T
A C G T C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:RGGCCMTGAA--
HDGYAATGAAAN
 C T A G A T C G A C T G A T G C G T A C G T A C A C G T C T A G C G T A G T C A A C G T A C G T
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--RGGCCMTGAA----
AAAGGTAATAAAATTT
 A C G T A C G T C T A G A T C G A C T G A T G C G T A C G T A C A C G T C T A G C G T A G T C A A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

CDX2/MA0465.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:RGGCCMTGAA-
AAGCCATAAAA
 C T A G A T C G A C T G A T G C G T A C G T A C A C G T C T A G C G T A G T C A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0012.1_Cdx1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--RGGCCMTGAA----
TAAGGTAATAAAATTA
 A C G T A C G T C T A G A T C G A C T G A T G C G T A C G T A C A C G T C T A G C G T A G T C A A C G T A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RGGCCMTGAA------
ACGGCCATAAAATTAAT
 A C G T C T A G A T C G A C T G A T G C G T A C G T A C A C G T C T A G C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T