Information for 9-AAAGTTTGGTAA (Motif 15)

C G T A C G T A C G T A A C T G A C G T A G C T C G A T A C T G C A T G A G C T G C T A C G T A
Reverse Opposite:
A C G T C A G T C T G A G T A C G T A C C G T A C T G A G T C A G T A C A C G T C G A T A C G T
p-value:1e-8
log p-value:-1.918e+01
Information Content per bp:1.816
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets94.8 +/- 51.0bp
Average Position of motif in Background56.3 +/- 16.4bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAAGTTTGGTAA-
TATAAGTAGGTCAA
 A C G T C G T A C G T A C G T A A C T G A C G T A G C T C G A T A C T G C A T G A G C T G C T A C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORB/MA1150.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAAGTTTGGTAA-
--AATTAGGTCAC
 C G T A C G T A C G T A A C T G A C G T A G C T C G A T A C T G C A T G A G C T G C T A C G T A A C G T
A C G T A C G T C G T A G C T A C G A T A C G T C T G A A C T G C T A G A G C T G A T C C T G A G A T C

RORC/MA1151.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAAGTTTGGTAA
ATAAGTAGGTCA
 C G T A C G T A C G T A A C T G A C G T A G C T C G A T A C T G C A T G A G C T G C T A C G T A
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAAGTTTGGTAA-
-WAABTAGGTCAV
 C G T A C G T A C G T A A C T G A C G T A G C T C G A T A C T G C A T G A G C T G C T A C G T A A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G C T A G A G C T A G T C C G T A T C A G

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAAGTTTGGTAA----
-AAWCTAGGTCARDNN
 C G T A C G T A C G T A A C T G A C G T A G C T C G A T A C T G C A T G A G C T G C T A C G T A A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAAGTTTGGTAA
--AAYTAGGTCA
 C G T A C G T A C G T A A C T G A C G T A G C T C G A T A C T G C A T G A G C T G C T A C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AAAGTTTGGTAA
--AAYTAGGTCA
 C G T A C G T A C G T A A C T G A C G T A G C T C G A T A C T G C A T G A G C T G C T A C G T A
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

PB0016.1_Foxj1_1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AAAGTTTGGTAA----
NNNNTTTGTTTACNNT
 C G T A C G T A C G T A A C T G A C G T A G C T C G A T A C T G C A T G A G C T G C T A C G T A A C G T A C G T A C G T A C G T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

Nr2e3/MA0164.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AAAGTTTGGTAA
-AAGCTTG----
 C G T A C G T A C G T A A C T G A C G T A G C T C G A T A C T G C A T G A G C T G C T A C G T A
A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AAAGTTTGGTAA
TCGCGAAGGTTGTACT
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A C T G A C G T A G C T C G A T A C T G C A T G A G C T G C T A C G T A
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T