Information for 12-CTGGCTCCTCTC (Motif 18)

A G T C A C G T A T C G A C T G A G T C A G C T A G T C A G T C A G C T A T G C A C G T A G T C
Reverse Opposite:
A C T G C G T A A T C G C T G A A C T G A C T G C T G A A C T G A G T C A T G C C G T A A C T G
p-value:1e-7
log p-value:-1.762e+01
Information Content per bp:1.928
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif34.2
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets116.4 +/- 43.8bp
Average Position of motif in Background111.8 +/- 48.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCTCCTCTC-
GYCTGGYYTNTGTCA
 A C G T A C G T A G T C A C G T A T C G A C T G A G T C A G C T A G T C A G T C A G C T A T G C A C G T A G T C A C G T
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTGGCTCCTCTC
---GCTCCG---
 A G T C A C G T A T C G A C T G A G T C A G C T A G T C A G T C A G C T A T G C A C G T A G T C
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTGGCTCCTCTC--
TACGAGACTCCTCTAAC
 A C G T A C G T A C G T A G T C A C G T A T C G A C T G A G T C A G C T A G T C A G T C A G C T A T G C A C G T A G T C A C G T A C G T
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGGCTCCTCTC---
-NNGCACCTTTCTCC
 A G T C A C G T A T C G A C T G A G T C A G C T A G T C A G T C A G C T A T G C A C G T A G T C A C G T A C G T A C G T
A C G T A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CTGGCTCCTCTC
CTGTCTGTCACCT---
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G A C T G A G T C A G C T A G T C A G T C A G C T A T G C A C G T A G T C
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGGCTCCTCTC-
-TGACACCTGTCA
 A G T C A C G T A T C G A C T G A G T C A G C T A G T C A G T C A G C T A T G C A C G T A G T C A C G T
A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTGGCTCCTCTC---
CTGCCWVCTTTTRTA
 A G T C A C G T A T C G A C T G A G T C A G C T A G T C A G T C A G C T A T G C A C G T A G T C A C G T A C G T A C G T
A G T C G A C T A C T G G A T C G T A C C G T A T G A C A G T C C G A T A G C T A C G T A C G T C T A G G A C T C T G A

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CTGGCTCCTCTC---
---GCTCCGCCCMCY
 A G T C A C G T A T C G A C T G A G T C A G C T A G T C A G T C A G C T A T G C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCTCCTCTC
TGTCTGDCACCT---
 A C G T A C G T A C G T A G T C A C G T A T C G A C T G A G T C A G C T A G T C A G T C A G C T A T G C A C G T A G T C
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CTGGCTCCTCTC-
-TGACACCTGTCA
 A G T C A C G T A T C G A C T G A G T C A G C T A G T C A G T C A G C T A T G C A C G T A G T C A C G T
A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A