Information for 13-RTTTCTCATWTT (Motif 20)

C T A G A G C T A C G T A C G T A G T C A C G T A T G C C G T A A G C T C G A T A C G T A C G T
Reverse Opposite:
C G T A G T C A C G T A C T G A A C G T A T C G C G T A A C T G C G T A C G T A C T G A A G T C
p-value:1e-7
log p-value:-1.695e+01
Information Content per bp:1.842
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif17.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets80.9 +/- 54.6bp
Average Position of motif in Background87.5 +/- 69.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.71
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0148.1_Mtf1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---RTTTCTCATWTT
NNTTTTTCTTATNT-
 A C G T A C G T A C G T C T A G A G C T A C G T A C G T A G T C A C G T A T G C C G T A A G C T C G A T A C G T A C G T
A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RTTTCTCATWTT
HTTTCCCASG--
 C T A G A G C T A C G T A C G T A G T C A C G T A T G C C G T A A G C T C G A T A C G T A C G T
G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G A C G T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:RTTTCTCATWTT
--TTMACACCTT
 C T A G A G C T A C G T A C G T A G T C A C G T A T G C C G T A A G C T C G A T A C G T A C G T
A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:RTTTCTCATWTT-----
TGTTCCCATTGTGTACT
 C T A G A G C T A C G T A C G T A G T C A C G T A T G C C G T A A G C T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

RBPJ/MA1116.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RTTTCTCATWTT
NNTTCCCANN--
 C T A G A G C T A C G T A C G T A G T C A C G T A T G C C G T A A G C T C G A T A C G T A C G T
A T G C A C G T C A G T G C A T T G A C T G A C A G T C C T G A A T C G T C A G A C G T A C G T

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RTTTCTCATWTT
-TTTCACACCT-
 C T A G A G C T A C G T A C G T A G T C A C G T A T G C C G T A A G C T C G A T A C G T A C G T
A C G T A C G T G C A T G A C T T A G C C G T A G A T C C G T A T G A C G A T C G A C T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--RTTTCTCATWTT-
NCNTTTGTTATTTNN
 A C G T A C G T C T A G A G C T A C G T A C G T A G T C A C G T A T G C C G T A A G C T C G A T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PB0013.1_Eomes_1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--RTTTCTCATWTT---
NNTTTTCACACCTTNNN
 A C G T A C G T C T A G A G C T A C G T A C G T A G T C A C G T A T G C C G T A A G C T C G A T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

EOMES/MA0800.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-RTTTCTCATWTT
NTTTTCACACCTT
 A C G T C T A G A G C T A C G T A C G T A G T C A C G T A T G C C G T A A G C T C G A T A C G T A C G T
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

TBX21/MA0690.1/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:RTTTCTCATWTT
--TTCACACCTT
 C T A G A G C T A C G T A C G T A G T C A C G T A T G C C G T A A G C T C G A T A C G T A C G T
A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T