Information for 7-TSTCMAGDSACT (Motif 6)

C G A T A T G C G C A T T A G C G T A C C G T A A C T G C T G A T A G C C T G A A G T C C G A T
Reverse Opposite:
G C T A T C A G G A C T A T C G G A C T T G A C G C A T A C T G A T C G C G T A T A C G G C T A
p-value:1e-11
log p-value:-2.757e+01
Information Content per bp:1.526
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.46%
Number of Background Sequences with motif559.4
Percentage of Background Sequences with motif1.15%
Average Position of motif in Targets103.9 +/- 48.0bp
Average Position of motif in Background100.6 +/- 59.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TSTCMAGDSACT---
CAAATCCAGACATCACA
 A C G T A C G T C G A T A T G C G C A T T A G C G T A C C G T A A C T G C T G A T A G C C T G A A G T C C G A T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4/MA1153.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TSTCMAGDSACT
--TCTAGACA--
 C G A T A T G C G C A T T A G C G T A C C G T A A C T G C T G A T A G C C T G A A G T C C G A T
A C G T A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TSTCMAGDSACT
---CCAGACAG-
 C G A T A T G C G C A T T A G C G T A C C G T A A C T G C T G A T A G C C T G A A G T C C G A T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TSTCMAGDSACT
TGTCTAGACG--
 C G A T A T G C G C A T T A G C G T A C C G T A A C T G C T G A T A G C C T G A A G T C C G A T
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TSTCMAGDSACT-
---CCAGACRSVB
 C G A T A T G C G C A T T A G C G T A C C G T A A C T G C T G A T A G C C T G A A G T C C G A T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PBX3/MA1114.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TSTCMAGDSACT-----
NNNCCTGTCACTCANNN
 C G A T A T G C G C A T T A G C G T A C C G T A A C T G C T G A T A G C C T G A A G T C C G A T A C G T A C G T A C G T A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TSTCMAGDSACT
-RTCATGTGAC-
 C G A T A T G C G C A T T A G C G T A C C G T A A C T G C T G A T A G C C T G A A G T C C G A T
A C G T T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TSTCMAGDSACT
--ARNTGACA--
 C G A T A T G C G C A T T A G C G T A C C G T A A C T G C T G A T A G C C T G A A G T C C G A T
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T

EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TSTCMAGDSACT-
DBTCCCHWGGGAVTN
 A C G T A C G T C G A T A T G C G C A T T A G C G T A C C G T A A C T G C T G A T A G C C T G A A G T C C G A T A C G T
C G T A A C G T A G C T A G T C G A T C G A T C G A C T C G T A C T A G C T A G T C A G T C G A T G A C G A C T C G A T

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TSTCMAGDSACT--
AAGCACCTGTCAATAT
 A C G T A C G T C G A T A T G C G C A T T A G C G T A C C G T A A C T G C T G A T A G C C T G A A G T C C G A T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T