Information for 6-GTTGGCAG (Motif 11)

A T C G C A G T A G C T A C T G A T C G T A G C T G C A A T C G
Reverse Opposite:
A T G C A C G T A T C G T A G C T G A C C T G A G T C A T A G C
p-value:1e-11
log p-value:-2.538e+01
Information Content per bp:1.795
Number of Target Sequences with motif160.0
Percentage of Target Sequences with motif21.11%
Number of Background Sequences with motif5996.3
Percentage of Background Sequences with motif12.36%
Average Position of motif in Targets103.0 +/- 52.5bp
Average Position of motif in Background99.6 +/- 61.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GTTGGCAG
CTTGGCAA
 A T C G C A G T A G C T A C T G A T C G T A G C T G C A A T C G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCAG-
NNTTGGCANN
 A C G T A T C G C A G T A G C T A C T G A T C G T A G C T G C A A T C G A C G T
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCAG
GGTTGGCAT
 A C G T A T C G C A G T A G C T A C T G A T C G T A G C T G C A A T C G
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:4
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCAG
VGCTGGCA-
 A C G T A T C G C A G T A G C T A C T G A T C G T A G C T G C A A T C G
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GTTGGCAG-
NTTGGCANN
 A T C G C A G T A G C T A C T G A T C G T A G C T G C A A T C G A C G T
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGGCAG---
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T A T C G C A G T A G C T A C T G A T C G T A G C T G C A A T C G A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

NFIC/MA0161.2/Jaspar

Match Rank:7
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GTTGGCAG-
TACTTGGCAGA
 A C G T A C G T A T C G C A G T A G C T A C T G A T C G T A G C T G C A A T C G A C G T
G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GTTGGCAG-
-TTGACAGC
 A T C G C A G T A G C T A C T G A T C G T A G C T G C A A T C G A C G T
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GTTGGCAG--
VBTGWCAGCB
 A T C G C A G T A G C T A C T G A T C G T A G C T G C A A T C G A C G T A C G T
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GTTGGCAG-
-TTGACAGG
 A T C G C A G T A G C T A C T G A T C G T A G C T G C A A T C G A C G T
A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G