Information for 9-CGTTGTTCTG (Motif 12)

A T G C C A T G A G C T A G C T A C T G A C G T G C A T A G T C A C G T A T C G
Reverse Opposite:
A T G C C G T A A C T G C G T A C G T A G T A C T C G A C T G A G T A C A T C G
p-value:1e-10
log p-value:-2.437e+01
Information Content per bp:1.846
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.77%
Number of Background Sequences with motif203.5
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets110.4 +/- 49.8bp
Average Position of motif in Background94.2 +/- 60.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CGTTGTTCTG
YCTTTGTTCC-
 A C G T A T G C C A T G A G C T A G C T A C T G A C G T G C A T A G T C A C G T A T C G
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CGTTGTTCTG--
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A C G T A T G C C A T G A G C T A G C T A C T G A C G T G C A T A G T C A C G T A T C G A C G T A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox6/MA0515.1/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CGTTGTTCTG
CCATTGTTTT-
 A C G T A T G C C A T G A G C T A G C T A C T G A C G T G C A T A G T C A C G T A T C G
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CGTTGTTCTG--
TNNTCCTTTGTTCTNNT
 A C G T A C G T A C G T A C G T A C G T A T G C C A T G A G C T A G C T A C T G A C G T G C A T A G T C A C G T A T C G A C G T A C G T
C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGTTGTTCTG
CCATTGTTNY-
 A C G T A T G C C A T G A G C T A G C T A C T G A C G T G C A T A G T C A C G T A T C G
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CGTTGTTCTG
CCWTTGTYYB-
 A C G T A T G C C A T G A G C T A G C T A C T G A C G T G C A T A G T C A C G T A T C G
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CGTTGTTCTG
NCCATTGTTC--
 A C G T A C G T A T G C C A T G A G C T A G C T A C T G A C G T G C A T A G T C A C G T A T C G
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

SOX10/MA0442.2/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CGTTGTTCTG
NNCTTTGTTNN-
 A C G T A C G T A T G C C A T G A G C T A G C T A C T G A C G T G C A T A G T C A C G T A T C G
A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:9
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CGTTGTTCTG-----
NNCTTTGTTTTGNTNNN
 A C G T A C G T A T G C C A T G A G C T A G C T A C T G A C G T G C A T A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CGTTGTTCTG
CCTTTGTTTT-
 A C G T A T G C C A T G A G C T A G C T A C T G A C G T G C A T A G T C A C G T A T C G
A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T