Information for 4-CCAGCAGAGG (Motif 4)

G T A C T A G C C G T A A T C G G T A C C T G A A C T G C T G A C A T G A C T G
Reverse Opposite:
T G A C G T A C A G C T G T A C G A C T C A T G A T G C C G A T A T C G A C T G
p-value:1e-19
log p-value:-4.519e+01
Information Content per bp:1.853
Number of Target Sequences with motif74.0
Percentage of Target Sequences with motif9.76%
Number of Background Sequences with motif1337.3
Percentage of Background Sequences with motif2.76%
Average Position of motif in Targets94.5 +/- 44.8bp
Average Position of motif in Background101.2 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCAGAGG---------
GCCASCAGGGGGCGCYVNNG
 A C G T G T A C T A G C C G T A A T C G G T A C C T G A A C T G C T G A C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---CCAGCAGAGG------
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T G T A C T A G C C G T A A T C G G T A C C T G A A C T G C T G A C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCAGAGG-------
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T G T A C T A G C C G T A A T C G G T A C C T G A A C T G C T G A C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCAGCAGAGG-
CACAGCAGGGGG
 A C G T G T A C T A G C C G T A A T C G G T A C C T G A A C T G C T G A C A T G A C T G A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCAGAGG---
DCHCAGCAGGRGGCC
 A C G T A C G T G T A C T A G C C G T A A T C G G T A C C T G A A C T G C T G A C A T G A C T G A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

CTCFL/MA1102.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCAGCAGAGG-----
-CACCAGGGGGCACC
 G T A C T A G C C G T A A T C G G T A C C T G A A C T G C T G A C A T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T A G C T C G A T A G C A G T C T G C A T A C G T C A G A C T G T A C G A C T G G T A C T C G A A T G C A G T C

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCAGCAGAGG--
--AACAGATGGT
 G T A C T A G C C G T A A T C G G T A C C T G A A C T G C T G A C A T G A C T G A C G T A C G T
A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

ASCL1/MA1100.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCAGCAGAGG---
GCAGCAGCTGGCG
 G T A C T A G C C G T A A T C G G T A C C T G A A C T G C T G A C A T G A C T G A C G T A C G T A C G T
T A C G T A G C C T G A T C A G T A G C C G T A A T C G T A G C A C G T A T C G A T C G A T G C T A C G

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCAGCAGAGG--
--AACAGATGGC
 G T A C T A G C C G T A A T C G G T A C C T G A A C T G C T G A C A T G A C T G A C G T A C G T
A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCAGCAGAGG-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T G T A C T A G C C G T A A T C G G T A C C T G A A C T G C T G A C A T G A C T G A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A