Information for 6-TGGCCAGA (Motif 17)

C G A T C A T G A T C G T A G C G A T C C G T A A T C G T C G A
Reverse Opposite:
A C G T T A G C G C A T C T A G A T C G T A G C G T A C G C T A
p-value:1e-7
log p-value:-1.657e+01
Information Content per bp:1.600
Number of Target Sequences with motif264.0
Percentage of Target Sequences with motif28.70%
Number of Background Sequences with motif10313.8
Percentage of Background Sequences with motif21.26%
Average Position of motif in Targets106.5 +/- 52.7bp
Average Position of motif in Background99.3 +/- 61.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:1
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TGGCCAGA
CYWSTGGTCARA
 A C G T A C G T A C G T A C G T C G A T C A T G A T C G T A G C G A T C C G T A A T C G T C G A
G A T C G A C T C G T A T A G C C G A T A C T G A C T G G A C T T G A C C G T A T C A G C T G A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGGCCAGA--
TGCCCAGNHW
 C G A T C A T G A T C G T A G C G A T C C G T A A T C G T C G A A C G T A C G T
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGGCCAGA--
ATGCCAGACN
 C G A T C A T G A T C G T A G C G A T C C G T A A T C G T C G A A C G T A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGGCCAGA
CGTGCCAAG
 A C G T C G A T C A T G A T C G T A G C G A T C C G T A A T C G T C G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGGCCAGA-------
CAAATCCAGACATCACA
 A C G T A C G T C G A T C A T G A T C G T A G C G A T C C G T A A T C G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGGCCAGA-----
---CCAGACRSVB
 C G A T C A T G A T C G T A G C G A T C C G T A A T C G T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGGCCAGA---
---CCAGACAG
 C G A T C A T G A T C G T A G C G A T C C G T A A T C G T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGGCCAGA
TGATTGGCTANN
 A C G T A C G T A C G T A C G T C G A T C A T G A T C G T A G C G A T C C G T A A T C G T C G A
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

TWIST1/MA1123.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGGCCAGA-----
ATTCCAGATGTTT
 C G A T C A T G A T C G T A G C G A T C C G T A A T C G T C G A A C G T A C G T A C G T A C G T A C G T
C T G A G C A T C G A T T G A C G T A C C G T A A T C G T G C A G A C T A C T G A C G T A C G T G A C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGGCCAGA
TTGCCAAG
 C G A T C A T G A T C G T A G C G A T C C G T A A T C G T C G A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G