Information for 1-TTGCCAAG (Motif 2)

G A C T C G A T A C T G T A G C A T G C C T G A C G T A C A T G
Reverse Opposite:
G T A C C G A T A G C T A T C G A T C G G T A C C G T A C T G A
p-value:1e-18
log p-value:-4.168e+01
Information Content per bp:1.802
Number of Target Sequences with motif192.0
Percentage of Target Sequences with motif20.87%
Number of Background Sequences with motif5261.6
Percentage of Background Sequences with motif10.85%
Average Position of motif in Targets102.1 +/- 54.2bp
Average Position of motif in Background99.6 +/- 62.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCAAG--
NNTGCCAAGNN
 A C G T G A C T C G A T A C T G T A G C A T G C C T G A C G T A C A T G A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-TTGCCAAG-
GGTGCCAAGT
 A C G T G A C T C G A T A C T G T A G C A T G C C T G A C G T A C A T G A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:TTGCCAAG
TTGCCAAG
 G A C T C G A T A C T G T A G C A T G C C T G A C G T A C A T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-TTGCCAAG
CGTGCCAAG
 A C G T G A C T C G A T A C T G T A G C A T G C C T G A C G T A C A T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TTGCCAAG-
ATGCCAACC
 G A C T C G A T A C T G T A G C A T G C C T G A C G T A C A T G A C G T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TTGCCAAG-
-TGCCAGCB
 G A C T C G A T A C T G T A G C A T G C C T G A C G T A C A T G A C G T
A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TTGCCAAG---
-TGCCCAGNHW
 G A C T C G A T A C T G T A G C A T G C C T G A C G T A C A T G A C G T A C G T A C G T
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TTGCCAAG-
-TGTCANYT
 G A C T C G A T A C T G T A G C A T G C C T G A C G T A C A T G A C G T
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTGCCAAG-
ATGCCCACC
 G A C T C G A T A C T G T A G C A T G C C T G A C G T A C A T G A C G T
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCAAG
RHTGWCAR-
 A C G T G A C T C G A T A C T G T A G C A T G C C T G A C G T A C A T G
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T