Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 920)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48389)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-39	-9.175e+01	0.0000	88.0	9.57%	759.7	1.57%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-27	-6.302e+01	0.0000	96.0	10.43%	1335.2	2.75%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-20	-4.673e+01	0.0000	109.0	11.85%	2084.1	4.30%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-8	-1.941e+01	0.0000	154.0	16.74%	5060.8	10.43%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-8	-1.871e+01	0.0000	264.0	28.70%	10076.5	20.77%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-7	-1.694e+01	0.0000	89.0	9.67%	2555.8	5.27%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-6	-1.553e+01	0.0000	109.0	11.85%	3454.9	7.12%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-6	-1.467e+01	0.0000	138.0	15.00%	4756.9	9.80%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-6	-1.434e+01	0.0000	105.0	11.41%	3375.0	6.96%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-5	-1.349e+01	0.0001	118.0	12.83%	3992.6	8.23%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-5	-1.314e+01	0.0001	203.0	22.07%	7848.6	16.18%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-5	-1.294e+01	0.0001	72.0	7.83%	2125.3	4.38%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-5	-1.261e+01	0.0001	41.0	4.46%	976.1	2.01%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-5	-1.183e+01	0.0002	79.0	8.59%	2481.3	5.11%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-4	-1.129e+01	0.0004	106.0	11.52%	3664.0	7.55%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-1.102e+01	0.0004	42.0	4.57%	1082.7	2.23%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-4	-1.034e+01	0.0008	22.0	2.39%	424.2	0.87%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-4	-1.018e+01	0.0009	208.0	22.61%	8461.8	17.44%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-4	-1.010e+01	0.0009	96.0	10.43%	3338.4	6.88%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-4	-9.950e+00	0.0010	149.0	16.20%	5727.8	11.81%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-4	-9.890e+00	0.0010	78.0	8.48%	2586.5	5.33%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-4	-9.710e+00	0.0012	53.0	5.76%	1574.1	3.24%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-4	-9.646e+00	0.0012	34.0	3.70%	855.7	1.76%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-4	-9.628e+00	0.0012	201.0	21.85%	8206.2	16.91%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-4	-9.541e+00	0.0012	46.0	5.00%	1310.9	2.70%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-9.444e+00	0.0013	120.0	13.04%	4465.4	9.20%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-4	-9.318e+00	0.0014	97.0	10.54%	3455.9	7.12%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-4	-9.297e+00	0.0014	100.0	10.87%	3589.2	7.40%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-4	-9.252e+00	0.0014	156.0	16.96%	6137.5	12.65%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-3	-9.148e+00	0.0015	236.0	25.65%	9964.8	20.54%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-3	-9.088e+00	0.0016	12.0	1.30%	167.3	0.34%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-3	-8.974e+00	0.0017	106.0	11.52%	3888.4	8.01%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-3	-8.932e+00	0.0017	120.0	13.04%	4522.2	9.32%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-3	-8.462e+00	0.0027	8.0	0.87%	82.7	0.17%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-3	-8.348e+00	0.0029	64.0	6.96%	2121.9	4.37%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-3	-8.248e+00	0.0031	62.0	6.74%	2045.1	4.22%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-8.218e+00	0.0031	46.0	5.00%	1391.6	2.87%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-8.074e+00	0.0035	155.0	16.85%	6248.4	12.88%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-3	-7.931e+00	0.0039	51.0	5.54%	1614.0	3.33%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3	-7.893e+00	0.0040	73.0	7.93%	2544.3	5.24%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-7.700e+00	0.0047	77.0	8.37%	2736.5	5.64%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-3	-7.674e+00	0.0047	52.0	5.65%	1673.3	3.45%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-7.629e+00	0.0048	64.0	6.96%	2181.3	4.50%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-3	-7.623e+00	0.0048	22.0	2.39%	516.2	1.06%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-3	-7.579e+00	0.0049	69.0	7.50%	2400.5	4.95%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-3	-7.479e+00	0.0053	109.0	11.85%	4192.2	8.64%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-3	-7.428e+00	0.0054	353.0	38.37%	16121.5	33.23%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-3	-7.422e+00	0.0054	109.0	11.85%	4199.5	8.66%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-3	-7.418e+00	0.0054	29.0	3.15%	779.0	1.61%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-3	-7.278e+00	0.0059	87.0	9.46%	3221.4	6.64%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-3	-7.260e+00	0.0059	32.0	3.48%	900.9	1.86%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-3	-7.221e+00	0.0060	150.0	16.30%	6135.1	12.65%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-3	-7.105e+00	0.0066	38.0	4.13%	1144.3	2.36%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-3	-6.969e+00	0.0075	203.0	22.07%	8723.1	17.98%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-2	-6.854e+00	0.0082	79.0	8.59%	2910.1	6.00%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-2	-6.740e+00	0.0090	128.0	13.91%	5169.3	10.65%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-2	-6.630e+00	0.0099	64.0	6.96%	2272.6	4.68%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e-2	-6.628e+00	0.0099	39.0	4.24%	1216.5	2.51%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-2	-6.593e+00	0.0099	20.0	2.17%	488.1	1.01%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-2	-6.532e+00	0.0104	196.0	21.30%	8460.8	17.44%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-2	-6.529e+00	0.0104	51.0	5.54%	1722.4	3.55%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-6.499e+00	0.0104	52.0	5.65%	1768.0	3.64%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-2	-6.421e+00	0.0111	72.0	7.83%	2645.1	5.45%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-6.310e+00	0.0122	78.0	8.48%	2925.4	6.03%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-2	-6.251e+00	0.0127	19.0	2.07%	467.9	0.96%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-6.087e+00	0.0147	96.0	10.43%	3771.4	7.77%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-5.967e+00	0.0164	166.0	18.04%	7104.8	14.64%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-2	-5.951e+00	0.0164	83.0	9.02%	3193.8	6.58%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-2	-5.929e+00	0.0165	112.0	12.17%	4536.7	9.35%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-2	-5.901e+00	0.0167	223.0	24.24%	9909.8	20.43%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-2	-5.566e+00	0.0231	114.0	12.39%	4684.6	9.66%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-5.563e+00	0.0231	120.0	13.04%	4968.7	10.24%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-2	-5.359e+00	0.0276	231.0	25.11%	10422.5	21.48%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-5.310e+00	0.0286	166.0	18.04%	7225.4	14.89%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-2	-5.130e+00	0.0338	50.0	5.43%	1807.1	3.72%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-5.038e+00	0.0365	32.0	3.48%	1044.2	2.15%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-5.026e+00	0.0365	39.0	4.24%	1340.3	2.76%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-2	-4.823e+00	0.0441	89.0	9.67%	3621.4	7.46%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-4.804e+00	0.0444	165.0	17.93%	7276.7	15.00%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-4.785e+00	0.0447	191.0	20.76%	8561.9	17.65%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-4.550e+00	0.0558	179.0	19.46%	8019.2	16.53%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-4.540e+00	0.0558	24.0	2.61%	751.2	1.55%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-4.298e+00	0.0701	67.0	7.28%	2672.7	5.51%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-4.296e+00	0.0701	16.0	1.74%	449.4	0.93%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-1	-4.197e+00	0.0758	62.0	6.74%	2455.2	5.06%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-4.134e+00	0.0797	148.0	16.09%	6582.0	13.57%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-4.002e+00	0.0899	44.0	4.78%	1660.7	3.42%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-1	-3.995e+00	0.0899	100.0	10.87%	4277.1	8.82%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.964e+00	0.0913	9.0	0.98%	207.6	0.43%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.933e+00	0.0932	54.0	5.87%	2122.7	4.38%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.895e+00	0.0957	64.0	6.96%	2589.7	5.34%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.812e+00	0.1029	57.0	6.20%	2276.9	4.69%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-1	-3.804e+00	0.1029	105.0	11.41%	4554.0	9.39%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-3.788e+00	0.1031	48.0	5.22%	1866.8	3.85%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-3.772e+00	0.1036	79.0	8.59%	3313.8	6.83%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-3.765e+00	0.1036	31.0	3.37%	1109.5	2.29%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.717e+00	0.1072	24.0	2.61%	812.6	1.67%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.695e+00	0.1086	30.0	3.26%	1073.0	2.21%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-3.683e+00	0.1087	55.0	5.98%	2202.0	4.54%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.630e+00	0.1134	57.0	6.20%	2302.0	4.74%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-3.617e+00	0.1139	46.0	5.00%	1796.1	3.70%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.566e+00	0.1186	51.0	5.54%	2032.1	4.19%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-3.560e+00	0.1186	118.0	12.83%	5234.6	10.79%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-3.512e+00	0.1228	211.0	22.93%	9875.2	20.35%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e-1	-3.406e+00	0.1352	164.0	17.83%	7544.8	15.55%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-3.396e+00	0.1353	2.0	0.22%	15.2	0.03%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-3.345e+00	0.1398	16.0	1.74%	506.2	1.04%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-1	-3.345e+00	0.1398	16.0	1.74%	506.7	1.04%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.271e+00	0.1491	162.0	17.61%	7479.9	15.42%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-3.136e+00	0.1691	75.0	8.15%	3232.8	6.66%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-3.132e+00	0.1691	19.0	2.07%	647.8	1.34%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.116e+00	0.1695	8.0	0.87%	205.4	0.42%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.048e+00	0.1797	35.0	3.80%	1364.1	2.81%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-3.041e+00	0.1797	113.0	12.28%	5103.4	10.52%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-1	-3.025e+00	0.1807	88.0	9.57%	3882.8	8.00%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.014e+00	0.1812	77.0	8.37%	3351.9	6.91%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.010e+00	0.1812	192.0	20.87%	9060.1	18.67%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-2.980e+00	0.1843	257.0	27.93%	12378.2	25.51%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-1	-2.961e+00	0.1862	223.0	24.24%	10648.1	21.95%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.961e+00	0.1862	255.0	27.72%	12282.6	25.32%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.955e+00	0.1862	33.0	3.59%	1285.0	2.65%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.942e+00	0.1862	188.0	20.43%	8878.5	18.30%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-2.935e+00	0.1862	104.0	11.30%	4684.4	9.66%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.927e+00	0.1862	197.0	21.41%	9338.5	19.25%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-1	-2.898e+00	0.1889	76.0	8.26%	3325.3	6.85%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.890e+00	0.1889	57.0	6.20%	2414.3	4.98%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-1	-2.870e+00	0.1910	42.0	4.57%	1710.6	3.53%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e-1	-2.840e+00	0.1954	70.0	7.61%	3046.8	6.28%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-1	-2.820e+00	0.1977	185.0	20.11%	8763.3	18.06%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.805e+00	0.1993	5.0	0.54%	110.4	0.23%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.715e+00	0.2163	35.0	3.80%	1406.8	2.90%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-2.710e+00	0.2163	55.0	5.98%	2349.5	4.84%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-2.673e+00	0.2221	140.0	15.22%	6539.4	13.48%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.673e+00	0.2221	33.0	3.59%	1319.5	2.72%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.657e+00	0.2224	47.0	5.11%	1977.1	4.08%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.646e+00	0.2232	78.0	8.48%	3473.6	7.16%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-2.644e+00	0.2232	26.0	2.83%	1002.9	2.07%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-2.600e+00	0.2303	26.0	2.83%	1007.7	2.08%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.586e+00	0.2318	32.0	3.48%	1284.8	2.65%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.573e+00	0.2333	7.0	0.76%	192.0	0.40%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-2.560e+00	0.2347	19.0	2.07%	697.6	1.44%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-1	-2.513e+00	0.2442	91.0	9.89%	4141.5	8.54%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-2.491e+00	0.2480	41.0	4.46%	1719.5	3.54%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.458e+00	0.2544	8.0	0.87%	237.3	0.49%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e-1	-2.419e+00	0.2628	6.0	0.65%	161.1	0.33%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.418e+00	0.2628	29.0	3.15%	1167.8	2.41%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.381e+00	0.2692	22.0	2.39%	850.4	1.75%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-1	-2.351e+00	0.2755	174.0	18.91%	8355.7	17.22%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.287e+00	0.2917	137.0	14.89%	6501.4	13.40%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.195e+00	0.3177	200.0	21.74%	9737.9	20.07%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.184e+00	0.3191	105.0	11.41%	4922.5	10.15%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.172e+00	0.3210	135.0	14.67%	6436.9	13.27%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.155e+00	0.3243	152.0	16.52%	7303.2	15.05%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-2.145e+00	0.3253	264.0	28.70%	13050.9	26.90%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.100e+00	0.3382	18.0	1.96%	699.6	1.44%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-2.090e+00	0.3392	6.0	0.65%	177.2	0.37%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.083e+00	0.3394	36.0	3.91%	1546.1	3.19%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.079e+00	0.3394	20.0	2.17%	793.5	1.64%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.078e+00	0.3394	325.0	35.33%	16244.2	33.48%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-2.077e+00	0.3394	55.0	5.98%	2468.9	5.09%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.034e+00	0.3476	6.0	0.65%	180.5	0.37%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.989e+00	0.3617	32.0	3.48%	1370.6	2.83%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.969e+00	0.3665	194.0	21.09%	9517.0	19.62%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.968e+00	0.3665	9.0	0.98%	310.5	0.64%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.962e+00	0.3665	84.0	9.13%	3932.9	8.11%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-1.906e+00	0.3833	80.0	8.70%	3747.9	7.72%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.902e+00	0.3833	9.0	0.98%	315.8	0.65%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.896e+00	0.3833	373.0	40.54%	18836.8	38.83%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.895e+00	0.3833	123.0	13.37%	5918.1	12.20%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.877e+00	0.3852	19.0	2.07%	771.5	1.59%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.875e+00	0.3852	6.0	0.65%	189.6	0.39%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.810e+00	0.4070	17.0	1.85%	686.0	1.41%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.798e+00	0.4099	23.0	2.50%	970.7	2.00%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.795e+00	0.4099	109.0	11.85%	5241.9	10.80%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.783e+00	0.4113	496.0	53.91%	25362.4	52.28%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.776e+00	0.4119	9.0	0.98%	326.0	0.67%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.773e+00	0.4119	51.0	5.54%	2337.9	4.82%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.760e+00	0.4136	15.0	1.63%	599.9	1.24%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.746e+00	0.4171	102.0	11.09%	4902.9	10.11%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.734e+00	0.4199	25.0	2.72%	1075.5	2.22%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.732e+00	0.4199	52.0	5.65%	2396.5	4.94%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.720e+00	0.4210	21.0	2.28%	886.7	1.83%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.718e+00	0.4210	147.0	15.98%	7205.2	14.85%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.715e+00	0.4210	24.0	2.61%	1030.5	2.12%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.708e+00	0.4210	165.0	17.93%	8132.6	16.76%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.707e+00	0.4210	19.0	2.07%	793.9	1.64%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.695e+00	0.4210	24.0	2.61%	1033.1	2.13%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.695e+00	0.4210	32.0	3.48%	1420.5	2.93%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.692e+00	0.4210	44.0	4.78%	2009.4	4.14%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.692e+00	0.4210	19.0	2.07%	795.5	1.64%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.676e+00	0.4210	115.0	12.50%	5586.8	11.52%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.671e+00	0.4210	303.0	32.93%	15295.2	31.53%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.623e+00	0.4375	79.0	8.59%	3777.2	7.79%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.610e+00	0.4410	42.0	4.57%	1928.9	3.98%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.603e+00	0.4420	46.0	5.00%	2128.7	4.39%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.562e+00	0.4580	41.0	4.46%	1889.5	3.89%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.545e+00	0.4633	24.0	2.61%	1057.5	2.18%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-1.540e+00	0.4636	174.0	18.91%	8667.3	17.86%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.531e+00	0.4651	44.0	4.78%	2045.9	4.22%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.516e+00	0.4700	3.0	0.33%	85.7	0.18%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.504e+00	0.4732	183.0	19.89%	9149.0	18.86%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.476e+00	0.4845	224.0	24.35%	11286.9	23.26%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.474e+00	0.4845	9.0	0.98%	352.8	0.73%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.423e+00	0.5057	229.0	24.89%	11573.6	23.86%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.414e+00	0.5078	39.0	4.24%	1823.1	3.76%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.409e+00	0.5079	31.0	3.37%	1426.5	2.94%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.397e+00	0.5112	17.0	1.85%	741.7	1.53%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.396e+00	0.5112	5.0	0.54%	177.9	0.37%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.396e+00	0.5112	106.0	11.52%	5229.9	10.78%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.352e+00	0.5276	41.0	4.46%	1938.2	3.99%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.350e+00	0.5276	38.0	4.13%	1789.0	3.69%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.332e+00	0.5326	6.0	0.65%	227.0	0.47%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.316e+00	0.5390	124.0	13.48%	6187.4	12.75%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.311e+00	0.5391	143.0	15.54%	7170.2	14.78%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.306e+00	0.5393	17.0	1.85%	755.6	1.56%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.298e+00	0.5411	2.0	0.22%	54.4	0.11%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.295e+00	0.5411	73.0	7.93%	3577.9	7.37%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.284e+00	0.5437	76.0	8.26%	3734.6	7.70%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.268e+00	0.5500	92.0	10.00%	4560.5	9.40%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.264e+00	0.5500	27.0	2.93%	1257.3	2.59%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.260e+00	0.5500	8.0	0.87%	327.7	0.68%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.252e+00	0.5511	121.0	13.15%	6060.4	12.49%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.242e+00	0.5546	115.0	12.50%	5755.6	11.86%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.220e+00	0.5641	3.0	0.33%	100.7	0.21%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.204e+00	0.5707	8.0	0.87%	333.0	0.69%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.160e+00	0.5939	7.0	0.76%	290.9	0.60%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.142e+00	0.6020	12.0	1.30%	535.7	1.10%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.113e+00	0.6168	80.0	8.70%	4003.6	8.25%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.107e+00	0.6179	43.0	4.67%	2105.7	4.34%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.099e+00	0.6200	8.0	0.87%	345.9	0.71%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.083e+00	0.6272	6.0	0.65%	251.0	0.52%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.066e+00	0.6353	120.0	13.04%	6095.0	12.56%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.059e+00	0.6372	9.0	0.98%	399.3	0.82%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.048e+00	0.6411	57.0	6.20%	2842.9	5.86%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.032e+00	0.6490	41.0	4.46%	2025.1	4.17%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.010e+00	0.6602	99.0	10.76%	5031.5	10.37%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-9.926e-01	0.6693	272.0	29.57%	14081.5	29.02%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-9.906e-01	0.6693	19.0	2.07%	912.8	1.88%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-9.905e-01	0.6693	5.0	0.54%	211.9	0.44%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-9.844e-01	0.6693	21.0	2.28%	1015.8	2.09%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-9.844e-01	0.6693	84.0	9.13%	4264.1	8.79%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-9.841e-01	0.6693	70.0	7.61%	3538.5	7.29%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-9.742e-01	0.6693	112.0	12.17%	5725.7	11.80%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-9.559e-01	0.6744	25.0	2.72%	1226.2	2.53%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-9.428e-01	0.6805	13.0	1.41%	617.4	1.27%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-9.310e-01	0.6858	75.0	8.15%	3820.4	7.87%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-9.276e-01	0.6858	7.0	0.76%	317.7	0.65%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-9.212e-01	0.6870	41.0	4.46%	2060.8	4.25%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.182e-01	0.6870	26.0	2.83%	1287.4	2.65%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-9.168e-01	0.6870	9.0	0.98%	419.7	0.87%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-9.079e-01	0.6878	214.0	23.26%	11099.9	22.88%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-9.009e-01	0.6899	212.0	23.04%	11000.0	22.67%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.996e-01	0.6899	42.0	4.57%	2119.6	4.37%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-8.980e-01	0.6899	62.0	6.74%	3158.1	6.51%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-8.814e-01	0.6952	32.0	3.48%	1607.4	3.31%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-8.805e-01	0.6952	54.0	5.87%	2749.8	5.67%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-8.777e-01	0.6952	38.0	4.13%	1919.1	3.96%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.633e-01	0.6997	6.0	0.65%	275.8	0.57%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-8.560e-01	0.7021	57.0	6.20%	2915.5	6.01%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-8.543e-01	0.7021	35.0	3.80%	1771.9	3.65%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.537e-01	0.7021	45.0	4.89%	2291.5	4.72%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-8.507e-01	0.7021	42.0	4.57%	2136.2	4.40%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-8.449e-01	0.7021	108.0	11.74%	5585.1	11.51%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-8.356e-01	0.7030	23.0	2.50%	1155.0	2.38%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.335e-01	0.7030	107.0	11.63%	5539.5	11.42%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-8.077e-01	0.7174	63.0	6.85%	3249.8	6.70%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.978e-01	0.7219	7.0	0.76%	335.1	0.69%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.945e-01	0.7219	8.0	0.87%	387.4	0.80%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-7.682e-01	0.7380	192.0	20.87%	10046.0	20.71%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-7.651e-01	0.7380	1.0	0.11%	33.6	0.07%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-7.521e-01	0.7445	28.0	3.04%	1439.6	2.97%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-7.475e-01	0.7451	82.0	8.91%	4275.0	8.81%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-7.345e-01	0.7521	169.0	18.37%	8861.0	18.26%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-7.333e-01	0.7521	51.0	5.54%	2653.9	5.47%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.305e-01	0.7521	418.0	45.43%	21981.2	45.31%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-7.186e-01	0.7559	124.0	13.48%	6502.2	13.40%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-7.078e-01	0.7613	14.0	1.52%	717.2	1.48%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-7.075e-01	0.7613	64.0	6.96%	3349.8	6.90%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-7.060e-01	0.7613	135.0	14.67%	7090.9	14.62%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.022e-01	0.7613	111.0	12.07%	5828.6	12.01%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-6.877e-01	0.7657	5.0	0.54%	247.7	0.51%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.772e-01	0.7711	66.0	7.17%	3470.2	7.15%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-6.619e-01	0.7802	7.0	0.76%	357.4	0.74%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.588e-01	0.7802	13.0	1.41%	676.6	1.39%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.587e-01	0.7802	4.0	0.43%	198.3	0.41%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.485e-01	0.7824	1.0	0.11%	39.1	0.08%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.473e-01	0.7824	74.0	8.04%	3909.4	8.06%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.451e-01	0.7824	11.0	1.20%	573.6	1.18%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.427e-01	0.7824	22.0	2.39%	1158.4	2.39%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.341e-01	0.7828	7.0	0.76%	362.5	0.75%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.305e-01	0.7829	211.0	22.93%	11160.5	23.00%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.202e-01	0.7883	2.0	0.22%	95.2	0.20%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.192e-01	0.7883	16.0	1.74%	846.8	1.75%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.170e-01	0.7883	10.0	1.09%	526.6	1.09%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.136e-01	0.7883	3.0	0.33%	150.6	0.31%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.098e-01	0.7883	153.0	16.63%	8113.3	16.72%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-5.869e-01	0.8013	17.0	1.85%	910.0	1.88%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.770e-01	0.8066	20.0	2.17%	1073.5	2.21%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-5.738e-01	0.8066	3.0	0.33%	155.8	0.32%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-5.690e-01	0.8076	19.0	2.07%	1022.7	2.11%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-5.683e-01	0.8076	57.0	6.20%	3052.4	6.29%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-5.586e-01	0.8107	3.0	0.33%	157.6	0.32%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.502e-01	0.8148	33.0	3.59%	1780.5	3.67%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.389e-01	0.8214	66.0	7.17%	3549.9	7.32%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-5.328e-01	0.8237	56.0	6.09%	3019.1	6.22%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-5.325e-01	0.8237	72.0	7.83%	3873.0	7.98%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-5.276e-01	0.8237	1.0	0.11%	47.6	0.10%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.222e-01	0.8244	10.0	1.09%	549.9	1.13%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.197e-01	0.8244	8.0	0.87%	440.7	0.91%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.197e-01	0.8244	8.0	0.87%	440.7	0.91%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-5.193e-01	0.8244	108.0	11.74%	5801.0	11.96%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-5.109e-01	0.8244	13.0	1.41%	716.6	1.48%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.063e-01	0.8244	208.0	22.61%	11122.8	22.93%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.898e-01	0.8352	6.0	0.65%	336.6	0.69%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-4.873e-01	0.8352	44.0	4.78%	2403.0	4.95%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-4.778e-01	0.8399	159.0	17.28%	8550.3	17.62%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-4.473e-01	0.8632	7.0	0.76%	402.1	0.83%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.444e-01	0.8632	88.0	9.57%	4793.2	9.88%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-4.392e-01	0.8648	23.0	2.50%	1289.0	2.66%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.385e-01	0.8648	141.0	15.33%	7631.1	15.73%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.240e-01	0.8726	94.0	10.22%	5132.6	10.58%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.225e-01	0.8726	8.0	0.87%	465.9	0.96%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.225e-01	0.8726	8.0	0.87%	465.9	0.96%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.180e-01	0.8726	92.0	10.00%	5030.8	10.37%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-4.113e-01	0.8729	148.0	16.09%	8033.2	16.56%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.055e-01	0.8752	52.0	5.65%	2885.6	5.95%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-3.930e-01	0.8835	94.0	10.22%	5160.4	10.64%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.900e-01	0.8835	43.0	4.67%	2407.5	4.96%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-3.885e-01	0.8835	56.0	6.09%	3114.2	6.42%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-3.808e-01	0.8862	57.0	6.20%	3174.2	6.54%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-3.637e-01	0.8988	169.0	18.37%	9210.8	18.98%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.591e-01	0.9002	21.0	2.28%	1218.0	2.51%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.394e-01	0.9154	233.0	25.33%	12657.5	26.09%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.309e-01	0.9205	38.0	4.13%	2174.4	4.48%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.134e-01	0.9339	47.0	5.11%	2682.8	5.53%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.073e-01	0.9368	47.0	5.11%	2687.0	5.54%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-3.012e-01	0.9397	2.0	0.22%	139.8	0.29%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.999e-01	0.9397	26.0	2.83%	1530.1	3.15%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.977e-01	0.9397	7.0	0.76%	447.2	0.92%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.976e-01	0.9397	3.0	0.33%	205.0	0.42%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.968e-01	0.9397	26.0	2.83%	1532.9	3.16%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.950e-01	0.9397	4.0	0.43%	267.2	0.55%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.858e-01	0.9397	13.0	1.41%	802.4	1.65%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-2.781e-01	0.9421	69.0	7.50%	3920.1	8.08%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-2.683e-01	0.9486	46.0	5.00%	2666.9	5.50%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-2.543e-01	0.9592	95.0	10.33%	5366.8	11.06%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.541e-01	0.9592	7.0	0.76%	464.2	0.96%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-2.510e-01	0.9592	161.0	17.50%	8941.8	18.43%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.486e-01	0.9592	5.0	0.54%	345.0	0.71%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.466e-01	0.9592	295.0	32.07%	16117.8	33.22%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.293e-01	0.9695	278.0	30.22%	15247.2	31.43%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.209e-01	0.9749	23.0	2.50%	1418.0	2.92%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.159e-01	0.9770	12.0	1.30%	782.5	1.61%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.155e-01	0.9770	46.0	5.00%	2719.5	5.61%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.100e-01	0.9773	312.0	33.91%	17100.3	35.25%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.036e-01	0.9808	336.0	36.52%	18391.2	37.91%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.974e-01	0.9841	11.0	1.20%	734.8	1.51%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.942e-01	0.9845	11.0	1.20%	736.0	1.52%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.911e-01	0.9848	9.0	0.98%	617.3	1.27%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.833e-01	0.9897	50.0	5.43%	2981.8	6.15%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.828e-01	0.9897	5.0	0.54%	372.5	0.77%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.816e-01	0.9897	29.0	3.15%	1796.8	3.70%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.806e-01	0.9897	2.0	0.22%	172.0	0.35%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.757e-01	0.9897	3.0	0.33%	243.9	0.50%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.711e-01	0.9897	24.0	2.61%	1519.2	3.13%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.694e-01	0.9897	2.0	0.22%	175.6	0.36%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.670e-01	0.9897	73.0	7.93%	4286.5	8.84%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.493e-01	1.0000	30.0	3.26%	1890.3	3.90%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.493e-01	1.0000	34.0	3.70%	2120.3	4.37%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.485e-01	1.0000	13.0	1.41%	891.1	1.84%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.406e-01	1.0000	63.0	6.85%	3774.5	7.78%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.400e-01	1.0000	395.0	42.93%	21697.9	44.72%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.352e-01	1.0000	120.0	13.04%	6940.5	14.31%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.331e-01	1.0000	38.0	4.13%	2372.2	4.89%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.218e-01	1.0000	5.0	0.54%	408.5	0.84%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.215e-01	1.0000	14.0	1.52%	978.8	2.02%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.190e-01	1.0000	7.0	0.76%	542.5	1.12%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.122e-01	1.0000	106.0	11.52%	6227.3	12.84%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.082e-01	1.0000	57.0	6.20%	3499.2	7.21%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.071e-01	1.0000	25.0	2.72%	1656.2	3.41%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.033e-01	1.0000	28.0	3.04%	1839.3	3.79%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-9.481e-02	1.0000	14.0	1.52%	1010.1	2.08%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.125e-02	1.0000	5.0	0.54%	433.5	0.89%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-8.648e-02	1.0000	100.0	10.87%	5969.6	12.30%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-8.194e-02	1.0000	6.0	0.65%	511.7	1.05%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-7.793e-02	1.0000	179.0	19.46%	10351.0	21.34%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-7.741e-02	1.0000	5.0	0.54%	447.7	0.92%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.237e-02	1.0000	3.0	0.33%	307.3	0.63%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-7.061e-02	1.0000	28.0	3.04%	1902.9	3.92%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.589e-02	1.0000	51.0	5.54%	3263.6	6.73%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.586e-02	1.0000	16.0	1.74%	1181.7	2.44%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-6.180e-02	1.0000	51.0	5.54%	3276.0	6.75%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-6.150e-02	1.0000	10.0	1.09%	806.0	1.66%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-6.044e-02	1.0000	65.0	7.07%	4086.8	8.42%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-5.891e-02	1.0000	46.0	5.00%	2995.7	6.17%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.175e-02	1.0000	26.0	2.83%	1830.4	3.77%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.085e-02	1.0000	56.0	6.09%	3605.6	7.43%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-4.304e-02	1.0000	82.0	8.91%	5133.9	10.58%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.002e-02	1.0000	2.0	0.22%	265.6	0.55%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.777e-02	1.0000	45.0	4.89%	3019.6	6.22%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.663e-02	1.0000	17.0	1.85%	1318.1	2.72%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.604e-02	1.0000	17.0	1.85%	1321.0	2.72%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.590e-02	1.0000	76.0	8.26%	4831.2	9.96%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.473e-02	1.0000	7.0	0.76%	658.6	1.36%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-3.230e-02	1.0000	40.0	4.35%	2750.0	5.67%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.903e-02	1.0000	28.0	3.04%	2038.6	4.20%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.638e-02	1.0000	5.0	0.54%	535.1	1.10%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.164e-02	1.0000	45.0	4.89%	3116.4	6.42%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.754e-02	1.0000	105.0	11.41%	6649.4	13.71%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.681e-02	1.0000	2.0	0.22%	318.5	0.66%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.170e-02	1.0000	13.0	1.41%	1181.3	2.43%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-9.297e-03	1.0000	9.0	0.98%	920.5	1.90%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.952e-03	1.0000	3.0	0.33%	476.5	0.98%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.336e-03	1.0000	111.0	12.07%	7248.5	14.94%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.724e-03	1.0000	72.0	7.83%	4990.7	10.29%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.019e-03	1.0000	144.0	15.65%	9195.8	18.95%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.656e-03	1.0000	10.0	1.09%	1144.5	2.36%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-7.160e-04	1.0000	164.0	17.83%	10688.8	22.03%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-6.940e-04	1.0000	230.0	25.00%	14404.1	29.69%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-5.100e-05	1.0000	79.0	8.59%	6103.6	12.58%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	9.0	0.02%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	186.4	0.38%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	29.6	0.06%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	78.4	0.16%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	43.1	0.09%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	40.2	0.08%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	4.6	0.01%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	19.8	0.04%