Information for 11-AAGCACTCACCT (Motif 12)

C G T A C G T A A C T G A G T C C G T A G T A C C G A T A G T C C G T A G T A C G T A C A C G T
Reverse Opposite:
G T C A A C T G A C T G A C G T C T A G C G T A A C T G A C G T A C T G A G T C A C G T A C G T
p-value:1e-10
log p-value:-2.414e+01
Information Content per bp:1.887
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.57%
Number of Background Sequences with motif19.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets101.6 +/- 58.9bp
Average Position of motif in Background119.0 +/- 58.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AAGCACTCACCT
AAGCACTTAA--
 C G T A C G T A A C T G A G T C C G T A G T A C C G A T A G T C C G T A G T A C G T A C A C G T
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AAGCACTCACCT
AGCCACTCAAG-
 C G T A C G T A A C T G A G T C C G T A G T A C C G A T A G T C C G T A G T A C G T A C A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AAGCACTCACCT-
--NNACTTACCTN
 C G T A C G T A A C T G A G T C C G T A G T A C C G A T A G T C C G T A G T A C G T A C A C G T A C G T
A C G T A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AAGCACTCACCT
MRSCACTYAA--
 C G T A C G T A A C T G A G T C C G T A G T A C C G A T A G T C C G T A G T A C G T A C A C G T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAGCACTCACCT
AASCACTCAA--
 C G T A C G T A A C T G A G T C C G T A G T A C C G A T A G T C C G T A G T A C G T A C A C G T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAGCACTCACCT--
CGAAGCACACAAAATA
 A C G T A C G T C G T A C G T A A C T G A G T C C G T A G T A C C G A T A G T C C G T A G T A C G T A C A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PH0117.1_Nkx3-1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AAGCACTCACCT-
TACTAAGTACTTAAATG
 A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A G T A C C G A T A G T C C G T A G T A C G T A C A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAGCACTCACCT--
AGCGGCACACACGCAA
 A C G T A C G T C G T A C G T A A C T G A G T C C G T A G T A C C G A T A G T C C G T A G T A C G T A C A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AAGCACTCACCT--
CATAACCACTTAACAAC
 A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A G T A C C G A T A G T C C G T A G T A C G T A C A C G T A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PH0112.1_Nkx2-3/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAGCACTCACCT
CTTTAAGTACTTAATG
 A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A G T A C C G A T A G T C C G T A G T A C G T A C A C G T
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G