Information for 16-AAAGCTATAAAT (Motif 17)

C G T A C G T A C G T A A C T G A G T C G A C T C G T A C G A T C T G A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A G C T C G T A A C G T C G T A A C T G A G T C A C G T A C G T A C G T
p-value:1e-9
log p-value:-2.142e+01
Information Content per bp:1.909
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets101.4 +/- 56.7bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9/MA0485.1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:AAAGCTATAAAT---
--GGCCATAAATCAC
 C G T A C G T A C G T A A C T G A G T C G A C T C G T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:AAAGCTATAAAT--
--GGCCATAAATCA
 C G T A C G T A C G T A A C T G A G T C G A C T C G T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

CDX2/MA0465.1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AAAGCTATAAAT
-AAGCCATAAAA
 C G T A C G T A C G T A A C T G A G T C G A C T C G T A C G A T C T G A C G T A C G T A A C G T
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AAAGCTATAAAT----
AGAGCCATAAAATTCG
 C G T A C G T A C G T A A C T G A G T C G A C T C G T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

MEF2B/MA0660.1/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AAAGCTATAAAT---
---GCTATAAATAGC
 C G T A C G T A C G T A A C T G A G T C G A C T C G T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C

Hoxa9/MA0594.1/Jaspar

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AAAGCTATAAAT--
---GCCATAAATCA
 C G T A C G T A C G T A A C T G A G T C G A C T C G T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:AAAGCTATAAAT---
---GCTAAAAATAGC
 C G T A C G T A C G T A A C T G A G T C G A C T C G T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

MEF2A/MA0052.3/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AAAGCTATAAAT---
---TCTAAAAATAGA
 C G T A C G T A C G T A A C T G A G T C G A C T C G T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A

MEF2D/MA0773.1/Jaspar

Match Rank:9
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AAAGCTATAAAT---
---ACTATAAATAGA
 C G T A C G T A C G T A A C T G A G T C G A C T C G T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AAAGCTATAAAT--
--NGYCATAAAWCH
 C G T A C G T A C G T A A C T G A G T C G A C T C G T A C G A T C T G A C G T A C G T A A C G T A C G T A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A