Information for 15-CTGCTGGCCA (Motif 27)

A G T C C G A T T A C G A G T C G A C T A C T G A T C G G T A C G A T C C T G A
Reverse Opposite:
A G C T C T A G C A T G T A G C G T A C C T G A A C T G A T G C C G T A A C T G
p-value:1e-6
log p-value:-1.451e+01
Information Content per bp:1.841
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif5.70%
Number of Background Sequences with motif947.1
Percentage of Background Sequences with motif1.96%
Average Position of motif in Targets113.7 +/- 48.3bp
Average Position of motif in Background99.0 +/- 65.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CTGCTGGCCA--
CYWSTGGTCARA
 A G T C C G A T T A C G A G T C G A C T A C T G A T C G G T A C G A T C C T G A A C G T A C G T
G A T C G A C T C G T A T A G C C G A T A C T G A C T G G A C T T G A C C G T A T C A G C T G A

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.64
Offset:-9
Orientation:reverse strand
Alignment:---------CTGCTGGCCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T T A C G A G T C G A C T A C T G A T C G G T A C G A T C C T G A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTGCTGGCCA
ANCAGCTG----
 A C G T A C G T A G T C C G A T T A C G A G T C G A C T A C T G A T C G G T A C G A T C C T G A
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:-10
Orientation:forward strand
Alignment:----------CTGCTGGCCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T T A C G A G T C G A C T A C T G A T C G G T A C G A T C C T G A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTGCTGGCCA
NVCAGCTGBBNN
 A C G T A C G T A G T C C G A T T A C G A G T C G A C T A C T G A T C G G T A C G A T C C T G A
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTGCTGGCCA
NAACAGCTGG---
 A C G T A C G T A C G T A G T C C G A T T A C G A G T C G A C T A C T G A T C G G T A C G A T C C T G A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGGCCA
CCCCCTGCTGTG--
 A C G T A C G T A C G T A C G T A G T C C G A T T A C G A G T C G A C T A C T G A T C G G T A C G A T C C T G A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CTGCTGGCCA
CAGCAGCTGN---
 A C G T A C G T A C G T A G T C C G A T T A C G A G T C G A C T A C T G A T C G G T A C G A T C C T G A
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CTGCTGGCCA
GGCCYCCTGCTGDGH-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T T A C G A G T C G A C T A C T G A T C G G T A C G A T C C T G A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGCTGGCCA
WDNCTGGGCA
 A G T C C G A T T A C G A G T C G A C T A C T G A T C G G T A C G A T C C T G A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A