Information for 1-YYTGSCAA (Motif 3)

G A C T A G T C C G A T A C T G A T G C G T A C C G T A C T G A
Reverse Opposite:
A G C T G C A T C A T G T A C G G T A C G C T A T C A G C T G A
p-value:1e-15
log p-value:-3.513e+01
Information Content per bp:1.599
Number of Target Sequences with motif180.0
Percentage of Target Sequences with motif35.36%
Number of Background Sequences with motif9676.4
Percentage of Background Sequences with motif20.00%
Average Position of motif in Targets105.6 +/- 52.2bp
Average Position of motif in Background99.2 +/- 64.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.94
Offset:1
Orientation:forward strand
Alignment:YYTGSCAA-
-TTGCCAAG
 G A C T A G T C C G A T A C T G A T G C G T A C C G T A C T G A A C G T
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.88
Offset:0
Orientation:forward strand
Alignment:YYTGSCAA-
CGTGCCAAG
 G A C T A G T C C G A T A C T G A T G C G T A C C G T A C T G A A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.86
Offset:0
Orientation:forward strand
Alignment:YYTGSCAA--
GGTGCCAAGT
 G A C T A G T C C G A T A C T G A T G C G T A C C G T A C T G A A C G T A C G T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

NFIC/MA0161.2/Jaspar

Match Rank:4
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:YYTGSCAA---
NNTGCCAAGNN
 G A C T A G T C C G A T A C T G A T G C G T A C C G T A C T G A A C G T A C G T A C G T
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:5
Score:0.81
Offset:2
Orientation:forward strand
Alignment:YYTGSCAA--
--TGCCAGCB
 G A C T A G T C C G A T A C T G A T G C G T A C C G T A C T G A A C G T A C G T
A C G T A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.75
Offset:1
Orientation:forward strand
Alignment:YYTGSCAA--
-ATGCCAACC
 G A C T A G T C C G A T A C T G A T G C G T A C C G T A C T G A A C G T A C G T
A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.72
Offset:2
Orientation:forward strand
Alignment:YYTGSCAA--
--TGTCANYT
 G A C T A G T C C G A T A C T G A T G C G T A C C G T A C T G A A C G T A C G T
A C G T A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:YYTGSCAA
RHTGWCAR
 G A C T A G T C C G A T A C T G A T G C G T A C C G T A C T G A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:YYTGSCAA
GCTGTCAA
 G A C T A G T C C G A T A C T G A T G C G T A C C G T A C T G A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-YYTGSCAA-
VGCTGWCAVB
 A C G T G A C T A G T C C G A T A C T G A T G C G T A C C G T A C T G A A C G T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C