Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 509)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48475)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-32	-7.575e+01	0.0000	58.0	11.39%	683.5	1.41%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-26	-6.156e+01	0.0000	63.0	12.38%	1085.7	2.24%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-13	-2.994e+01	0.0000	61.0	11.98%	1965.0	4.06%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-12	-2.884e+01	0.0000	175.0	34.38%	9939.1	20.54%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-12	-2.807e+01	0.0000	59.0	11.59%	1943.3	4.02%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-12	-2.800e+01	0.0000	67.0	13.16%	2402.4	4.97%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-11	-2.580e+01	0.0000	53.0	10.41%	1720.1	3.56%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-10	-2.332e+01	0.0000	32.0	6.29%	760.4	1.57%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-9	-2.206e+01	0.0000	61.0	11.98%	2387.9	4.94%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-9	-2.205e+01	0.0000	41.0	8.06%	1247.0	2.58%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-9	-2.188e+01	0.0000	67.0	13.16%	2772.7	5.73%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-8	-1.913e+01	0.0000	32.0	6.29%	905.1	1.87%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-8	-1.871e+01	0.0000	50.0	9.82%	1926.9	3.98%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-6	-1.455e+01	0.0000	13.0	2.55%	207.8	0.43%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-6	-1.448e+01	0.0000	21.0	4.13%	541.8	1.12%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-5	-1.364e+01	0.0000	35.0	6.88%	1336.6	2.76%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-5	-1.326e+01	0.0000	66.0	12.97%	3420.4	7.07%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-5	-1.297e+01	0.0001	100.0	19.65%	6001.5	12.40%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-4	-1.100e+01	0.0004	66.0	12.97%	3670.0	7.59%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-4	-1.077e+01	0.0005	124.0	24.36%	8280.6	17.11%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-4	-1.065e+01	0.0005	11.0	2.16%	215.9	0.45%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-4	-1.058e+01	0.0005	31.0	6.09%	1290.7	2.67%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-4	-1.013e+01	0.0007	168.0	33.01%	12148.9	25.11%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-4	-1.002e+01	0.0008	34.0	6.68%	1523.6	3.15%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-4	-9.325e+00	0.0015	139.0	27.31%	9819.5	20.30%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-3	-9.153e+00	0.0017	120.0	23.58%	8249.0	17.05%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-3	-9.099e+00	0.0018	113.0	22.20%	7675.9	15.87%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-3	-8.967e+00	0.0020	87.0	17.09%	5577.2	11.53%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-3	-8.806e+00	0.0022	52.0	10.22%	2899.9	5.99%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-8.741e+00	0.0023	10.0	1.96%	223.6	0.46%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-8.666e+00	0.0024	9.0	1.77%	183.7	0.38%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-3	-8.542e+00	0.0026	58.0	11.39%	3380.4	6.99%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-3	-8.496e+00	0.0027	71.0	13.95%	4386.8	9.07%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-3	-8.068e+00	0.0039	52.0	10.22%	2991.0	6.18%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-3	-7.863e+00	0.0047	47.0	9.23%	2645.4	5.47%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-7.623e+00	0.0058	65.0	12.77%	4051.2	8.37%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-7.617e+00	0.0058	81.0	15.91%	5326.0	11.01%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-7.230e+00	0.0082	71.0	13.95%	4590.6	9.49%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-7.203e+00	0.0082	139.0	27.31%	10299.3	21.29%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-2	-6.892e+00	0.0109	21.0	4.13%	925.4	1.91%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-2	-6.553e+00	0.0149	89.0	17.49%	6188.1	12.79%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-2	-6.521e+00	0.0150	34.0	6.68%	1854.5	3.83%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-6.460e+00	0.0156	26.0	5.11%	1295.8	2.68%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-2	-6.433e+00	0.0156	101.0	19.84%	7221.6	14.93%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-6.433e+00	0.0156	22.0	4.32%	1028.0	2.12%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-2	-6.420e+00	0.0156	27.0	5.30%	1368.6	2.83%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-6.400e+00	0.0156	67.0	13.16%	4416.0	9.13%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-6.334e+00	0.0158	81.0	15.91%	5570.7	11.51%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-6.151e+00	0.0186	101.0	19.84%	7286.4	15.06%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-2	-6.030e+00	0.0206	52.0	10.22%	3285.1	6.79%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-2	-6.009e+00	0.0206	84.0	16.50%	5887.7	12.17%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-5.952e+00	0.0214	115.0	22.59%	8534.6	17.64%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-5.952e+00	0.0214	56.0	11.00%	3614.1	7.47%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-5.948e+00	0.0214	5.0	0.98%	88.4	0.18%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-2	-5.946e+00	0.0214	21.0	4.13%	1002.9	2.07%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-2	-5.934e+00	0.0214	9.0	1.77%	271.0	0.56%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-2	-5.901e+00	0.0214	14.0	2.75%	556.9	1.15%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-2	-5.747e+00	0.0235	35.0	6.88%	2022.4	4.18%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-2	-5.662e+00	0.0252	123.0	24.17%	9305.6	19.23%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-2	-5.472e+00	0.0300	2.0	0.39%	9.8	0.02%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.433e+00	0.0307	25.0	4.91%	1329.0	2.75%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-2	-5.349e+00	0.0328	62.0	12.18%	4208.8	8.70%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2	-5.292e+00	0.0342	38.0	7.47%	2312.2	4.78%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-2	-5.244e+00	0.0353	68.0	13.36%	4722.6	9.76%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-5.229e+00	0.0353	31.0	6.09%	1792.0	3.70%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-2	-5.213e+00	0.0353	134.0	26.33%	10400.9	21.50%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-2	-5.186e+00	0.0357	147.0	28.88%	11563.9	23.90%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-5.179e+00	0.0357	98.0	19.25%	7269.1	15.02%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-5.177e+00	0.0357	9.0	1.77%	305.1	0.63%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-5.107e+00	0.0370	87.0	17.09%	6347.1	13.12%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-4.999e+00	0.0406	22.0	4.32%	1162.8	2.40%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-2	-4.945e+00	0.0423	7.0	1.38%	208.0	0.43%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-4.876e+00	0.0447	31.0	6.09%	1838.9	3.80%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-4.842e+00	0.0456	80.0	15.72%	5818.4	12.03%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-1	-4.549e+00	0.0603	129.0	25.34%	10163.0	21.01%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-4.512e+00	0.0618	81.0	15.91%	5986.9	12.37%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-1	-4.503e+00	0.0618	69.0	13.56%	4971.4	10.28%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-4.490e+00	0.0618	55.0	10.81%	3809.8	7.87%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-4.468e+00	0.0621	36.0	7.07%	2284.6	4.72%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-4.466e+00	0.0621	293.0	57.56%	25373.3	52.44%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-4.417e+00	0.0637	59.0	11.59%	4155.8	8.59%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-1	-4.314e+00	0.0699	105.0	20.63%	8119.4	16.78%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-4.310e+00	0.0699	9.0	1.77%	352.7	0.73%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-4.239e+00	0.0735	10.0	1.96%	418.5	0.87%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-1	-4.226e+00	0.0736	59.0	11.59%	4198.8	8.68%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-4.170e+00	0.0769	41.0	8.06%	2733.5	5.65%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-4.100e+00	0.0816	59.0	11.59%	4227.3	8.74%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-4.035e+00	0.0860	37.0	7.27%	2437.7	5.04%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-4.006e+00	0.0875	4.0	0.79%	94.7	0.20%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-3.980e+00	0.0889	10.0	1.96%	436.5	0.90%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.977e+00	0.0889	15.0	2.95%	773.6	1.60%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.908e+00	0.0934	37.0	7.27%	2460.3	5.09%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-1	-3.906e+00	0.0934	19.0	3.73%	1068.1	2.21%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-1	-3.770e+00	0.1050	53.0	10.41%	3802.3	7.86%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-3.676e+00	0.1141	45.0	8.84%	3158.2	6.53%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.672e+00	0.1141	26.0	5.11%	1630.0	3.37%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-3.649e+00	0.1148	62.0	12.18%	4591.6	9.49%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.648e+00	0.1148	105.0	20.63%	8333.4	17.22%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.610e+00	0.1170	22.0	4.32%	1331.9	2.75%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-3.609e+00	0.1170	101.0	19.84%	7992.9	16.52%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-3.601e+00	0.1170	9.0	1.77%	399.8	0.83%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.586e+00	0.1170	11.0	2.16%	533.9	1.10%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-1	-3.552e+00	0.1191	31.0	6.09%	2044.2	4.23%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-3.546e+00	0.1191	24.0	4.72%	1495.0	3.09%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e-1	-3.453e+00	0.1290	92.0	18.07%	7250.8	14.99%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.400e+00	0.1347	6.0	1.18%	225.6	0.47%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-1	-3.400e+00	0.1347	120.0	23.58%	9760.4	20.17%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1	-3.397e+00	0.1347	38.0	7.47%	2642.0	5.46%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-3.384e+00	0.1347	34.0	6.68%	2317.5	4.79%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-3.375e+00	0.1347	15.0	2.95%	837.8	1.73%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.311e+00	0.1407	19.0	3.73%	1145.0	2.37%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.297e+00	0.1413	16.0	3.14%	921.0	1.90%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-3.272e+00	0.1436	54.0	10.61%	4009.2	8.29%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.261e+00	0.1439	52.0	10.22%	3842.6	7.94%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-3.213e+00	0.1498	69.0	13.56%	5315.9	10.99%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.153e+00	0.1576	46.0	9.04%	3362.8	6.95%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-3.105e+00	0.1641	17.0	3.34%	1020.5	2.11%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-3.093e+00	0.1646	2.0	0.39%	32.6	0.07%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-1	-3.039e+00	0.1722	63.0	12.38%	4847.2	10.02%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-1	-3.015e+00	0.1748	48.0	9.43%	3566.3	7.37%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.002e+00	0.1757	25.0	4.91%	1662.4	3.44%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-2.929e+00	0.1876	8.0	1.57%	385.5	0.80%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-2.910e+00	0.1896	85.0	16.70%	6820.0	14.10%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-2.892e+00	0.1915	25.0	4.91%	1682.8	3.48%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-2.881e+00	0.1919	67.0	13.16%	5244.1	10.84%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-1	-2.862e+00	0.1942	70.0	13.75%	5513.6	11.40%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-2.839e+00	0.1971	44.0	8.64%	3272.1	6.76%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-2.754e+00	0.2129	70.0	13.75%	5549.6	11.47%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-2.752e+00	0.2129	126.0	24.75%	10568.3	21.84%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-2.731e+00	0.2146	51.0	10.02%	3901.5	8.06%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.730e+00	0.2146	14.0	2.75%	842.7	1.74%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-2.729e+00	0.2146	61.0	11.98%	4769.6	9.86%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-1	-2.724e+00	0.2146	28.0	5.50%	1959.9	4.05%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-2.702e+00	0.2146	34.0	6.68%	2462.8	5.09%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-2.585e+00	0.2390	35.0	6.88%	2574.9	5.32%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.567e+00	0.2416	16.0	3.14%	1020.9	2.11%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.566e+00	0.2416	17.0	3.34%	1099.1	2.27%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-2.564e+00	0.2416	49.0	9.63%	3777.5	7.81%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.555e+00	0.2416	7.0	1.38%	348.8	0.72%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.533e+00	0.2428	31.0	6.09%	2250.5	4.65%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-2.532e+00	0.2428	7.0	1.38%	350.8	0.73%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-1	-2.515e+00	0.2438	58.0	11.39%	4576.1	9.46%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-2.512e+00	0.2438	118.0	23.18%	9949.4	20.56%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.501e+00	0.2438	29.0	5.70%	2090.7	4.32%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-2.491e+00	0.2444	186.0	36.54%	16224.6	33.53%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-2.469e+00	0.2483	114.0	22.40%	9605.2	19.85%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.464e+00	0.2483	91.0	17.88%	7528.0	15.56%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.384e+00	0.2665	10.0	1.96%	583.3	1.21%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.381e+00	0.2665	77.0	15.13%	6306.7	13.04%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.349e+00	0.2724	49.0	9.63%	3844.0	7.95%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-2.340e+00	0.2731	72.0	14.15%	5876.5	12.15%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-1	-2.334e+00	0.2731	7.0	1.38%	368.0	0.76%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.334e+00	0.2731	7.0	1.38%	368.8	0.76%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-1	-2.332e+00	0.2731	70.0	13.75%	5701.9	11.79%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.330e+00	0.2731	19.0	3.73%	1300.9	2.69%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-2.305e+00	0.2736	37.0	7.27%	2817.8	5.82%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.270e+00	0.2816	16.0	3.14%	1068.1	2.21%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.254e+00	0.2844	84.0	16.50%	6986.4	14.44%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.245e+00	0.2852	59.0	11.59%	4757.7	9.83%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.224e+00	0.2894	51.0	10.02%	4059.5	8.39%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.196e+00	0.2959	90.0	17.68%	7553.0	15.61%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.181e+00	0.2984	12.0	2.36%	764.0	1.58%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.172e+00	0.2992	14.0	2.75%	924.3	1.91%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-2.155e+00	0.3023	38.0	7.47%	2946.6	6.09%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-2.138e+00	0.3057	86.0	16.90%	7217.9	14.92%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.123e+00	0.3087	132.0	25.93%	11425.6	23.62%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.122e+00	0.3087	16.0	3.14%	1094.1	2.26%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.106e+00	0.3100	42.0	8.25%	3309.9	6.84%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.099e+00	0.3103	29.0	5.70%	2187.6	4.52%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.089e+00	0.3117	37.0	7.27%	2879.5	5.95%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.045e+00	0.3237	25.0	4.91%	1860.9	3.85%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.031e+00	0.3265	29.0	5.70%	2206.0	4.56%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.030e+00	0.3265	21.0	4.13%	1526.1	3.15%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.022e+00	0.3265	178.0	34.97%	15750.8	32.56%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.019e+00	0.3265	13.0	2.55%	869.6	1.80%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.984e+00	0.3345	33.0	6.48%	2563.5	5.30%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-1.954e+00	0.3426	53.0	10.41%	4332.2	8.95%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.919e+00	0.3527	33.0	6.48%	2582.1	5.34%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.914e+00	0.3527	35.0	6.88%	2758.7	5.70%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.862e+00	0.3695	140.0	27.50%	12313.9	25.45%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.792e+00	0.3940	10.0	1.96%	664.7	1.37%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.780e+00	0.3966	3.0	0.59%	134.8	0.28%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.752e+00	0.4057	5.0	0.98%	279.1	0.58%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.745e+00	0.4063	55.0	10.81%	4594.7	9.50%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.599e+00	0.4675	24.0	4.72%	1892.2	3.91%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.587e+00	0.4707	19.0	3.73%	1461.1	3.02%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.579e+00	0.4720	9.0	1.77%	617.3	1.28%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.572e+00	0.4726	4.0	0.79%	222.8	0.46%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.537e+00	0.4869	29.0	5.70%	2351.1	4.86%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.537e+00	0.4869	109.0	21.41%	9641.4	19.93%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.531e+00	0.4869	26.0	5.11%	2088.8	4.32%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.511e+00	0.4919	71.0	13.95%	6156.1	12.72%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.490e+00	0.4997	9.0	1.77%	632.0	1.31%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.489e+00	0.4997	20.0	3.93%	1574.8	3.25%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.471e+00	0.5042	16.0	3.14%	1231.8	2.55%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.462e+00	0.5063	5.0	0.98%	311.8	0.64%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.401e+00	0.5353	9.0	1.77%	648.6	1.34%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.371e+00	0.5459	7.0	1.38%	486.8	1.01%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.371e+00	0.5459	7.0	1.38%	486.8	1.01%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.356e+00	0.5515	36.0	7.07%	3044.6	6.29%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.333e+00	0.5612	84.0	16.50%	7454.1	15.41%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.314e+00	0.5695	11.0	2.16%	836.4	1.73%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.249e+00	0.6048	5.0	0.98%	339.1	0.70%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.244e+00	0.6049	20.0	3.93%	1647.1	3.40%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.242e+00	0.6049	5.0	0.98%	340.9	0.70%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.222e+00	0.6121	85.0	16.70%	7618.7	15.75%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.214e+00	0.6140	5.0	0.98%	344.5	0.71%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.180e+00	0.6325	20.0	3.93%	1668.8	3.45%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.177e+00	0.6325	55.0	10.81%	4867.0	10.06%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.174e+00	0.6325	74.0	14.54%	6628.1	13.70%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.162e+00	0.6343	31.0	6.09%	2671.9	5.52%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.162e+00	0.6343	16.0	3.14%	1315.2	2.72%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.161e+00	0.6343	23.0	4.52%	1945.6	4.02%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.143e+00	0.6379	6.0	1.18%	440.5	0.91%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.128e+00	0.6442	49.0	9.63%	4340.7	8.97%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.123e+00	0.6446	16.0	3.14%	1327.7	2.74%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-1.117e+00	0.6454	7.0	1.38%	531.1	1.10%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-1.111e+00	0.6467	27.0	5.30%	2328.7	4.81%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.103e+00	0.6487	51.0	10.02%	4539.3	9.38%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.083e+00	0.6590	122.0	23.97%	11181.0	23.11%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.078e+00	0.6592	167.0	32.81%	15420.7	31.87%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.071e+00	0.6609	91.0	17.88%	8284.0	17.12%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.067e+00	0.6609	5.0	0.98%	367.9	0.76%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.060e+00	0.6621	10.0	1.96%	808.4	1.67%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.045e+00	0.6688	94.0	18.47%	8584.0	17.74%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.037e+00	0.6711	3.0	0.59%	201.9	0.42%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.029e+00	0.6736	1.0	0.20%	42.8	0.09%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.027e+00	0.6736	20.0	3.93%	1722.3	3.56%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-9.910e-01	0.6937	2.0	0.39%	123.2	0.25%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-9.865e-01	0.6939	35.0	6.88%	3121.7	6.45%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-9.595e-01	0.7098	25.0	4.91%	2209.9	4.57%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-9.431e-01	0.7184	97.0	19.06%	8948.1	18.49%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-9.203e-01	0.7318	75.0	14.73%	6900.0	14.26%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-9.033e-01	0.7412	106.0	20.83%	9830.7	20.32%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-8.815e-01	0.7543	21.0	4.13%	1873.9	3.87%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-8.768e-01	0.7547	10.0	1.96%	858.1	1.77%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-8.751e-01	0.7547	16.0	3.14%	1412.9	2.92%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-8.715e-01	0.7547	57.0	11.20%	5245.5	10.84%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-8.655e-01	0.7547	21.0	4.13%	1880.1	3.89%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-8.548e-01	0.7586	60.0	11.79%	5539.3	11.45%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-8.502e-01	0.7589	14.0	2.75%	1236.5	2.56%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-8.409e-01	0.7628	21.0	4.13%	1891.1	3.91%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-8.308e-01	0.7674	24.0	4.72%	2177.0	4.50%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.219e-01	0.7711	233.0	45.78%	21939.8	45.35%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-8.153e-01	0.7730	26.0	5.11%	2371.3	4.90%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-8.088e-01	0.7749	43.0	8.45%	3972.6	8.21%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-8.060e-01	0.7749	5.0	0.98%	417.3	0.86%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.962e-01	0.7784	10.0	1.96%	883.7	1.83%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-7.931e-01	0.7784	10.0	1.96%	884.4	1.83%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.779e-01	0.7865	10.0	1.96%	889.5	1.84%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-7.593e-01	0.7980	42.0	8.25%	3911.4	8.08%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-7.592e-01	0.7980	75.0	14.73%	7032.4	14.54%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-7.546e-01	0.7980	33.0	6.48%	3064.5	6.33%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-7.455e-01	0.7996	8.0	1.57%	712.3	1.47%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.140e-01	0.8219	214.0	42.04%	20269.0	41.89%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-7.088e-01	0.8229	98.0	19.25%	9261.8	19.14%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-7.064e-01	0.8229	45.0	8.84%	4233.2	8.75%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.025e-01	0.8229	6.0	1.18%	536.0	1.11%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.918e-01	0.8274	6.0	1.18%	539.1	1.11%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.917e-01	0.8274	19.0	3.73%	1774.3	3.67%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.848e-01	0.8274	25.0	4.91%	2348.8	4.85%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-6.822e-01	0.8274	41.0	8.06%	3871.9	8.00%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.727e-01	0.8305	3.0	0.59%	258.3	0.53%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.662e-01	0.8328	16.0	3.14%	1502.0	3.10%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-6.659e-01	0.8328	176.0	34.58%	16722.1	34.56%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.627e-01	0.8328	7.0	1.38%	643.6	1.33%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.575e-01	0.8328	5.0	0.98%	453.3	0.94%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.575e-01	0.8328	5.0	0.98%	453.3	0.94%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.529e-01	0.8328	23.0	4.52%	2176.3	4.50%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-6.443e-01	0.8328	18.0	3.54%	1703.1	3.52%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-6.390e-01	0.8336	2.0	0.39%	168.4	0.35%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-6.364e-01	0.8336	11.0	2.16%	1036.2	2.14%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.325e-01	0.8336	23.0	4.52%	2188.5	4.52%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.207e-01	0.8397	6.0	1.18%	560.7	1.16%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.138e-01	0.8424	59.0	11.59%	5644.3	11.67%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.072e-01	0.8450	19.0	3.73%	1819.2	3.76%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-6.040e-01	0.8450	2.0	0.39%	174.7	0.36%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.853e-01	0.8574	23.0	4.52%	2217.6	4.58%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-5.845e-01	0.8574	74.0	14.54%	7108.0	14.69%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.787e-01	0.8574	4.0	0.79%	377.5	0.78%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.663e-01	0.8646	32.0	6.29%	3097.5	6.40%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.610e-01	0.8661	35.0	6.88%	3390.3	7.01%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-5.479e-01	0.8744	8.0	1.57%	781.1	1.61%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-5.400e-01	0.8783	35.0	6.88%	3407.4	7.04%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-5.287e-01	0.8851	121.0	23.77%	11670.0	24.12%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.214e-01	0.8885	124.0	24.36%	11966.9	24.73%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-5.174e-01	0.8890	38.0	7.47%	3716.6	7.68%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-5.158e-01	0.8890	106.0	20.83%	10252.8	21.19%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.828e-01	0.9138	6.0	1.18%	608.4	1.26%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-4.776e-01	0.9155	9.0	1.77%	911.4	1.88%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.676e-01	0.9214	47.0	9.23%	4635.7	9.58%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-4.676e-01	0.9214	27.0	5.30%	2690.5	5.56%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.592e-01	0.9229	19.0	3.73%	1912.6	3.95%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-4.536e-01	0.9249	2.0	0.39%	205.2	0.42%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.493e-01	0.9257	29.0	5.70%	2901.7	6.00%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.459e-01	0.9258	6.0	1.18%	623.5	1.29%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.456e-01	0.9258	24.0	4.72%	2415.0	4.99%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-4.454e-01	0.9258	53.0	10.41%	5241.4	10.83%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.413e-01	0.9258	2.0	0.39%	208.4	0.43%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.308e-01	0.9273	38.0	7.47%	3798.0	7.85%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-4.082e-01	0.9454	14.0	2.75%	1451.4	3.00%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-4.024e-01	0.9477	26.0	5.11%	2648.1	5.47%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.912e-01	0.9552	7.0	1.38%	751.8	1.55%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.892e-01	0.9552	8.0	1.57%	855.1	1.77%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-3.883e-01	0.9552	27.0	5.30%	2760.5	5.71%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-3.866e-01	0.9552	10.0	1.96%	1061.9	2.19%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.826e-01	0.9552	16.0	3.14%	1670.7	3.45%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-3.755e-01	0.9552	148.0	29.08%	14504.9	29.98%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.658e-01	0.9608	4.0	0.79%	448.4	0.93%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.623e-01	0.9610	54.0	10.61%	5442.4	11.25%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-3.554e-01	0.9646	35.0	6.88%	3585.2	7.41%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-3.330e-01	0.9833	11.0	2.16%	1199.5	2.48%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.307e-01	0.9833	43.0	8.45%	4405.2	9.11%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.283e-01	0.9833	13.0	2.55%	1408.3	2.91%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.276e-01	0.9833	2.0	0.39%	241.9	0.50%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.192e-01	0.9843	3.0	0.59%	358.1	0.74%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-3.123e-01	0.9880	15.0	2.95%	1626.3	3.36%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-3.086e-01	0.9886	32.0	6.29%	3343.4	6.91%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.063e-01	0.9886	126.0	24.75%	12528.0	25.89%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.058e-01	0.9886	12.0	2.36%	1323.6	2.74%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.054e-01	0.9886	6.0	1.18%	693.3	1.43%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.053e-01	0.9886	68.0	13.36%	6898.7	14.26%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.047e-01	0.9886	30.0	5.89%	3148.7	6.51%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.960e-01	0.9886	20.0	3.93%	2151.8	4.45%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.950e-01	0.9886	122.0	23.97%	12165.5	25.14%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.941e-01	0.9886	3.0	0.59%	369.3	0.76%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.892e-01	0.9886	10.0	1.96%	1128.9	2.33%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.760e-01	0.9902	55.0	10.81%	5671.0	11.72%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-2.760e-01	0.9902	1.0	0.20%	135.2	0.28%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.738e-01	0.9902	165.0	32.42%	16357.1	33.81%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.634e-01	0.9936	4.0	0.79%	498.7	1.03%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-2.585e-01	0.9955	17.0	3.34%	1884.6	3.90%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.556e-01	0.9955	28.0	5.50%	3010.5	6.22%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.515e-01	0.9965	4.0	0.79%	505.5	1.04%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.419e-01	1.0000	2.0	0.39%	275.1	0.57%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.367e-01	1.0000	3.0	0.59%	398.1	0.82%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.341e-01	1.0000	7.0	1.38%	851.9	1.76%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.314e-01	1.0000	23.0	4.52%	2534.6	5.24%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-2.264e-01	1.0000	73.0	14.34%	7542.9	15.59%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-2.208e-01	1.0000	7.0	1.38%	862.7	1.78%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.127e-01	1.0000	5.0	0.98%	646.0	1.34%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.118e-01	1.0000	194.0	38.11%	19312.3	39.92%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.098e-01	1.0000	2.0	0.39%	291.4	0.60%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.077e-01	1.0000	21.0	4.13%	2361.9	4.88%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.973e-01	1.0000	8.0	1.57%	994.4	2.06%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.815e-01	1.0000	36.0	7.07%	3944.3	8.15%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.742e-01	1.0000	2.0	0.39%	313.0	0.65%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.711e-01	1.0000	2.0	0.39%	314.8	0.65%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.672e-01	1.0000	45.0	8.84%	4888.9	10.10%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.671e-01	1.0000	30.0	5.89%	3359.5	6.94%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.663e-01	1.0000	1.0	0.20%	178.2	0.37%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.601e-01	1.0000	50.0	9.82%	5410.3	11.18%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.523e-01	1.0000	83.0	16.31%	8726.2	18.04%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.453e-01	1.0000	9.0	1.77%	1166.9	2.41%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.448e-01	1.0000	7.0	1.38%	940.4	1.94%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.447e-01	1.0000	36.0	7.07%	4025.1	8.32%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.404e-01	1.0000	27.0	5.30%	3104.4	6.42%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.385e-01	1.0000	1.0	0.20%	194.2	0.40%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.371e-01	1.0000	2.0	0.39%	339.9	0.70%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.335e-01	1.0000	2.0	0.39%	342.6	0.71%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.334e-01	1.0000	43.0	8.45%	4771.3	9.86%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.128e-01	1.0000	82.0	16.11%	8769.3	18.13%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.125e-01	1.0000	141.0	27.70%	14578.0	30.13%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.104e-01	1.0000	4.0	0.79%	626.8	1.30%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.066e-01	1.0000	24.0	4.72%	2870.8	5.93%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.059e-01	1.0000	46.0	9.04%	5163.2	10.67%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.041e-01	1.0000	2.0	0.39%	370.5	0.77%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.000e-01	1.0000	20.0	3.93%	2459.1	5.08%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-8.532e-02	1.0000	22.0	4.32%	2717.4	5.62%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.402e-02	1.0000	23.0	4.52%	2829.6	5.85%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-7.882e-02	1.0000	56.0	11.00%	6297.7	13.02%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-7.446e-02	1.0000	10.0	1.96%	1412.4	2.92%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.384e-02	1.0000	6.0	1.18%	936.3	1.94%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.269e-02	1.0000	18.0	3.54%	2321.7	4.80%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.968e-02	1.0000	34.0	6.68%	4056.4	8.38%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.892e-02	1.0000	78.0	15.32%	8722.7	18.03%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-4.742e-02	1.0000	2.0	0.39%	458.7	0.95%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.724e-02	1.0000	33.0	6.48%	4065.2	8.40%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.520e-02	1.0000	7.0	1.38%	1140.2	2.36%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.165e-02	1.0000	4.0	0.79%	762.8	1.58%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.951e-02	1.0000	41.0	8.06%	4971.1	10.27%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-3.949e-02	1.0000	9.0	1.77%	1410.0	2.91%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.654e-02	1.0000	37.0	7.27%	4568.2	9.44%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.519e-02	1.0000	23.0	4.52%	3052.7	6.31%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-3.319e-02	1.0000	69.0	13.56%	7949.9	16.43%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-2.744e-02	1.0000	141.0	27.70%	15257.7	31.54%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.633e-02	1.0000	6.0	1.18%	1096.7	2.27%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.553e-02	1.0000	45.0	8.84%	5528.8	11.43%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-2.397e-02	1.0000	6.0	1.18%	1110.6	2.30%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.045e-02	1.0000	7.0	1.38%	1266.6	2.62%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.966e-02	1.0000	74.0	14.54%	8648.1	17.87%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.964e-02	1.0000	2.0	0.39%	555.5	1.15%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.909e-02	1.0000	20.0	3.93%	2853.6	5.90%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.873e-02	1.0000	57.0	11.20%	6893.5	14.25%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.223e-02	1.0000	20.0	3.93%	2948.7	6.09%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-9.255e-03	1.0000	12.0	2.36%	2036.1	4.21%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.289e-03	1.0000	27.0	5.30%	3870.3	8.00%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.544e-03	1.0000	1.0	0.20%	476.0	0.98%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.336e-03	1.0000	3.0	0.59%	868.8	1.80%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.610e-03	1.0000	13.0	2.55%	2282.4	4.72%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.973e-03	1.0000	3.0	0.59%	902.6	1.87%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-3.143e-03	1.0000	200.0	39.29%	21867.1	45.20%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-9.300e-04	1.0000	1.0	0.20%	659.5	1.36%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.040e-04	1.0000	50.0	9.82%	6973.2	14.41%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-4.730e-04	1.0000	18.0	3.54%	3304.4	6.83%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-3.890e-04	1.0000	17.0	3.34%	3208.0	6.63%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.150e-04	1.0000	19.0	3.73%	3563.7	7.37%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.870e-04	1.0000	35.0	6.88%	5559.7	11.49%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-4.000e-06	1.0000	28.0	5.50%	5366.0	11.09%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-2.000e-06	1.0000	45.0	8.84%	7559.4	15.62%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	48.0	9.43%	8313.9	17.18%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	59.0	11.59%	9773.3	20.20%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	248.5	0.51%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	96.7	0.20%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	7.2	0.01%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	70.9	0.15%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	266.2	0.55%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	38.2	0.08%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	0.000e+00	1.0000	0.0	0.00%	367.3	0.76%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	71.5	0.15%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	57.1	0.12%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	55.4	0.11%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	38.1	0.08%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	114.0	0.24%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	9.6	0.02%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	29.2	0.06%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	90.4	0.19%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	32.6	0.07%