Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 200282)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 197888)	% of Background Sequences with Motif
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-21654	-4.986e+04	0.0000	50411.0	25.17%	8984.1	4.54%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-21254	-4.894e+04	0.0000	54866.0	27.39%	11083.6	5.60%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-20666	-4.759e+04	0.0000	49387.0	24.66%	9045.5	4.57%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-20528	-4.727e+04	0.0000	53481.0	26.70%	10871.5	5.49%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-20523	-4.726e+04	0.0000	45872.0	22.90%	7706.3	3.89%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-19487	-4.487e+04	0.0000	56198.0	28.06%	12742.5	6.44%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-17955	-4.134e+04	0.0000	36262.0	18.10%	5243.8	2.65%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-15764	-3.630e+04	0.0000	29582.0	14.77%	3813.6	1.93%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-7023	-1.617e+04	0.0000	17602.0	8.79%	3158.6	1.60%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-5988	-1.379e+04	0.0000	12514.0	6.25%	1789.9	0.90%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-3809	-8.772e+03	0.0000	14128.0	7.05%	3662.2	1.85%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2532	-5.831e+03	0.0000	5621.0	2.81%	854.7	0.43%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2524	-5.813e+03	0.0000	5264.0	2.63%	739.9	0.37%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1974	-4.546e+03	0.0000	4614.0	2.30%	744.7	0.38%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-1949	-4.489e+03	0.0000	4381.0	2.19%	674.5	0.34%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1810	-4.168e+03	0.0000	11115.0	5.55%	4071.6	2.06%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1171	-2.699e+03	0.0000	7303.0	3.65%	2682.0	1.36%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1164	-2.682e+03	0.0000	48906.0	24.42%	35400.0	17.89%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1158	-2.667e+03	0.0000	23378.0	11.67%	14097.6	7.12%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1028	-2.369e+03	0.0000	14993.0	7.49%	8117.4	4.10%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-902	-2.079e+03	0.0000	23201.0	11.58%	14871.1	7.51%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-831	-1.914e+03	0.0000	24122.0	12.04%	15908.7	8.04%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-801	-1.845e+03	0.0000	13070.0	6.53%	7323.5	3.70%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-672	-1.549e+03	0.0000	28590.0	14.27%	20395.8	10.30%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-671	-1.545e+03	0.0000	9211.0	4.60%	4853.2	2.45%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-671	-1.545e+03	0.0000	40029.0	19.99%	30375.0	15.35%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-655	-1.509e+03	0.0000	18040.0	9.01%	11692.5	5.91%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-652	-1.503e+03	0.0000	24190.0	12.08%	16773.0	8.47%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-645	-1.487e+03	0.0000	28196.0	14.08%	20203.1	10.21%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-632	-1.457e+03	0.0000	13723.0	6.85%	8353.0	4.22%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-622	-1.434e+03	0.0000	18988.0	9.48%	12600.7	6.37%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-604	-1.392e+03	0.0000	24711.0	12.34%	17456.0	8.82%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-577	-1.331e+03	0.0000	24543.0	12.25%	17452.3	8.82%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-576	-1.328e+03	0.0000	24033.0	12.00%	17026.3	8.60%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-573	-1.321e+03	0.0000	20246.0	10.11%	13860.4	7.00%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-568	-1.308e+03	0.0000	2482.0	1.24%	717.1	0.36%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-542	-1.248e+03	0.0000	18708.0	9.34%	12736.0	6.43%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-527	-1.214e+03	0.0000	26088.0	13.03%	19057.9	9.63%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-522	-1.202e+03	0.0000	104251.0	52.05%	92209.3	46.59%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-508	-1.170e+03	0.0000	17346.0	8.66%	11769.9	5.95%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-504	-1.162e+03	0.0000	18047.0	9.01%	12366.1	6.25%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-484	-1.115e+03	0.0000	27600.0	13.78%	20628.5	10.42%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-444	-1.023e+03	0.0000	21328.0	10.65%	15450.1	7.81%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-443	-1.022e+03	0.0000	14982.0	7.48%	10123.4	5.11%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-442	-1.020e+03	0.0000	33042.0	16.50%	25715.5	12.99%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-437	-1.008e+03	0.0000	23809.0	11.89%	17624.6	8.90%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-436	-1.005e+03	0.0000	3112.0	1.55%	1225.6	0.62%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-419	-9.670e+02	0.0000	19554.0	9.76%	14075.7	7.11%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-416	-9.580e+02	0.0000	22879.0	11.42%	16954.8	8.57%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-405	-9.338e+02	0.0000	19750.0	9.86%	14325.0	7.24%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-401	-9.244e+02	0.0000	27833.0	13.90%	21388.0	10.81%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-400	-9.219e+02	0.0000	21291.0	10.63%	15679.5	7.92%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-398	-9.166e+02	0.0000	2828.0	1.41%	1111.0	0.56%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-384	-8.864e+02	0.0000	17389.0	8.68%	12433.5	6.28%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-381	-8.776e+02	0.0000	21266.0	10.62%	15777.3	7.97%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-368	-8.488e+02	0.0000	3387.0	1.69%	1511.2	0.76%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-368	-8.487e+02	0.0000	42552.0	21.25%	34948.7	17.66%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-359	-8.276e+02	0.0000	20910.0	10.44%	15607.4	7.89%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-357	-8.228e+02	0.0000	21813.0	10.89%	16406.6	8.29%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-340	-7.832e+02	0.0000	9868.0	4.93%	6428.2	3.25%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-339	-7.816e+02	0.0000	8104.0	4.05%	5032.6	2.54%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-334	-7.691e+02	0.0000	2760.0	1.38%	1171.6	0.59%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-333	-7.681e+02	0.0000	14672.0	7.33%	10422.9	5.27%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-332	-7.651e+02	0.0000	29539.0	14.75%	23433.6	11.84%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-320	-7.379e+02	0.0000	16035.0	8.01%	11653.9	5.89%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-319	-7.358e+02	0.0000	23116.0	11.54%	17812.6	9.00%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-299	-6.904e+02	0.0000	5407.0	2.70%	3101.9	1.57%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-275	-6.343e+02	0.0000	17468.0	8.72%	13175.5	6.66%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-270	-6.226e+02	0.0000	29244.0	14.60%	23700.1	11.97%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-254	-5.859e+02	0.0000	13069.0	6.53%	9520.3	4.81%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-251	-5.796e+02	0.0000	11583.0	5.78%	8276.7	4.18%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-245	-5.658e+02	0.0000	24339.0	12.15%	19492.0	9.85%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-244	-5.640e+02	0.0000	31152.0	15.55%	25680.1	12.97%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-238	-5.493e+02	0.0000	21553.0	10.76%	17057.8	8.62%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-237	-5.475e+02	0.0000	50962.0	25.44%	44195.4	22.33%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-235	-5.423e+02	0.0000	9096.0	4.54%	6285.2	3.18%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-233	-5.382e+02	0.0000	10726.0	5.36%	7656.1	3.87%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-228	-5.266e+02	0.0000	52798.0	26.36%	46047.4	23.26%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-226	-5.222e+02	0.0000	13284.0	6.63%	9879.1	4.99%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-225	-5.200e+02	0.0000	16723.0	8.35%	12879.3	6.51%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-215	-4.959e+02	0.0000	23219.0	11.59%	18756.3	9.48%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-213	-4.910e+02	0.0000	15428.0	7.70%	11837.9	5.98%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-203	-4.692e+02	0.0000	8842.0	4.41%	6242.6	3.15%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-203	-4.684e+02	0.0000	13531.0	6.76%	10252.3	5.18%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-197	-4.559e+02	0.0000	22544.0	11.26%	18309.1	9.25%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-193	-4.458e+02	0.0000	33689.0	16.82%	28572.0	14.44%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-191	-4.404e+02	0.0000	7560.0	3.77%	5242.5	2.65%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-191	-4.399e+02	0.0000	27522.0	13.74%	22913.3	11.58%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-187	-4.318e+02	0.0000	13218.0	6.60%	10094.2	5.10%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-185	-4.282e+02	0.0000	22057.0	11.01%	17984.1	9.09%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-183	-4.215e+02	0.0000	649.0	0.32%	159.7	0.08%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-182	-4.209e+02	0.0000	48197.0	24.06%	42318.7	21.38%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-179	-4.135e+02	0.0000	6432.0	3.21%	4372.3	2.21%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-169	-3.902e+02	0.0000	28836.0	14.40%	24365.3	12.31%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-168	-3.869e+02	0.0000	26456.0	13.21%	22188.5	11.21%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-163	-3.768e+02	0.0000	62535.0	31.22%	56299.5	28.44%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-161	-3.714e+02	0.0000	18123.0	9.05%	14669.9	7.41%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-160	-3.688e+02	0.0000	17021.0	8.50%	13689.3	6.92%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-160	-3.685e+02	0.0000	24387.0	12.18%	20378.8	10.30%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-158	-3.658e+02	0.0000	40828.0	20.38%	35700.0	18.04%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-156	-3.600e+02	0.0000	6711.0	3.35%	4723.1	2.39%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-154	-3.560e+02	0.0000	11344.0	5.66%	8702.9	4.40%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-154	-3.554e+02	0.0000	33825.0	16.89%	29190.8	14.75%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-151	-3.489e+02	0.0000	85637.0	42.76%	78919.9	39.87%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-151	-3.489e+02	0.0000	23721.0	11.84%	19863.2	10.04%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-151	-3.481e+02	0.0000	7157.0	3.57%	5126.9	2.59%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-150	-3.461e+02	0.0000	15695.0	7.84%	12591.8	6.36%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-149	-3.441e+02	0.0000	34216.0	17.08%	29622.2	14.97%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-147	-3.387e+02	0.0000	35432.0	17.69%	30793.8	15.56%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-144	-3.318e+02	0.0000	35730.0	17.84%	31115.6	15.72%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-144	-3.318e+02	0.0000	33272.0	16.61%	28812.2	14.56%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-143	-3.307e+02	0.0000	15300.0	7.64%	12299.4	6.21%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-143	-3.304e+02	0.0000	29132.0	14.54%	24959.1	12.61%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-143	-3.297e+02	0.0000	4839.0	2.42%	3248.1	1.64%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-141	-3.259e+02	0.0000	5548.0	2.77%	3837.3	1.94%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-141	-3.258e+02	0.0000	16044.0	8.01%	12987.0	6.56%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-137	-3.168e+02	0.0000	40976.0	20.46%	36155.5	18.27%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-136	-3.152e+02	0.0000	15729.0	7.85%	12748.4	6.44%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-134	-3.092e+02	0.0000	30189.0	15.07%	26066.7	13.17%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-129	-2.990e+02	0.0000	16649.0	8.31%	13649.3	6.90%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-128	-2.957e+02	0.0000	3782.0	1.89%	2463.3	1.24%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-127	-2.938e+02	0.0000	33405.0	16.68%	29171.0	14.74%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-125	-2.888e+02	0.0000	4453.0	2.22%	3019.9	1.53%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-125	-2.882e+02	0.0000	4107.0	2.05%	2739.8	1.38%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-122	-2.820e+02	0.0000	38014.0	18.98%	33592.2	16.97%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-122	-2.809e+02	0.0000	19699.0	9.84%	16514.9	8.34%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-121	-2.807e+02	0.0000	25088.0	12.53%	21486.6	10.86%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-120	-2.777e+02	0.0000	7424.0	3.71%	5546.1	2.80%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-120	-2.766e+02	0.0000	27086.0	13.52%	23367.2	11.81%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-117	-2.717e+02	0.0000	53532.0	26.73%	48457.1	24.48%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-117	-2.713e+02	0.0000	5569.0	2.78%	3985.1	2.01%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-117	-2.709e+02	0.0000	16783.0	8.38%	13900.5	7.02%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-113	-2.606e+02	0.0000	41609.0	20.77%	37154.1	18.77%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-110	-2.541e+02	0.0000	10719.0	5.35%	8512.7	4.30%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-107	-2.467e+02	0.0000	19190.0	9.58%	16225.6	8.20%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-105	-2.427e+02	0.0000	12004.0	5.99%	9706.4	4.90%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-104	-2.410e+02	0.0000	44212.0	22.07%	39786.2	20.10%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-100	-2.313e+02	0.0000	54083.0	27.00%	49329.8	24.92%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-99	-2.297e+02	0.0000	28127.0	14.04%	24638.4	12.45%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-99	-2.294e+02	0.0000	24729.0	12.35%	21460.2	10.84%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-98	-2.276e+02	0.0000	5148.0	2.57%	3744.2	1.89%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-98	-2.271e+02	0.0000	20760.0	10.36%	17784.6	8.99%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-97	-2.249e+02	0.0000	2428.0	1.21%	1519.7	0.77%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-97	-2.249e+02	0.0000	15138.0	7.56%	12625.0	6.38%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-96	-2.222e+02	0.0000	50493.0	25.21%	45958.2	23.22%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-95	-2.197e+02	0.0000	31645.0	15.80%	28019.2	14.16%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-94	-2.168e+02	0.0000	10317.0	5.15%	8303.6	4.20%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-90	-2.087e+02	0.0000	11467.0	5.73%	9371.5	4.73%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-90	-2.074e+02	0.0000	4563.0	2.28%	3303.4	1.67%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-88	-2.027e+02	0.0000	8151.0	4.07%	6431.6	3.25%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-88	-2.027e+02	0.0000	34969.0	17.46%	31295.4	15.81%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-87	-2.006e+02	0.0000	19331.0	9.65%	16617.6	8.40%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-85	-1.978e+02	0.0000	69034.0	34.47%	64122.6	32.40%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-84	-1.950e+02	0.0000	6180.0	3.09%	4728.3	2.39%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-79	-1.841e+02	0.0000	7306.0	3.65%	5754.3	2.91%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-79	-1.829e+02	0.0000	21945.0	10.96%	19164.5	9.68%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-76	-1.770e+02	0.0000	1457.0	0.73%	848.6	0.43%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-76	-1.763e+02	0.0000	2734.0	1.37%	1856.3	0.94%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-76	-1.763e+02	0.0000	2734.0	1.37%	1856.3	0.94%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-73	-1.683e+02	0.0000	4624.0	2.31%	3466.9	1.75%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-71	-1.654e+02	0.0000	11647.0	5.82%	9742.7	4.92%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-70	-1.613e+02	0.0000	9891.0	4.94%	8166.5	4.13%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-70	-1.613e+02	0.0000	2050.0	1.02%	1335.0	0.67%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-68	-1.577e+02	0.0000	18390.0	9.18%	16015.7	8.09%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-68	-1.576e+02	0.0000	25540.0	12.75%	22727.5	11.48%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-68	-1.571e+02	0.0000	33319.0	16.64%	30110.6	15.21%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-67	-1.562e+02	0.0000	13065.0	6.52%	11091.3	5.60%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-66	-1.533e+02	0.0000	16521.0	8.25%	14304.4	7.23%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-65	-1.514e+02	0.0000	79598.0	39.74%	74961.0	37.87%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-65	-1.512e+02	0.0000	12722.0	6.35%	10804.4	5.46%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-64	-1.486e+02	0.0000	2406.0	1.20%	1648.9	0.83%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-63	-1.471e+02	0.0000	33130.0	16.54%	30021.0	15.17%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-61	-1.421e+02	0.0000	45730.0	22.83%	42152.6	21.30%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-61	-1.415e+02	0.0000	4678.0	2.34%	3599.1	1.82%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-57	-1.329e+02	0.0000	13651.0	6.82%	11771.3	5.95%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-56	-1.301e+02	0.0000	9008.0	4.50%	7519.6	3.80%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-55	-1.289e+02	0.0000	6004.0	3.00%	4816.5	2.43%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-55	-1.275e+02	0.0000	18936.0	9.45%	16742.7	8.46%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-54	-1.256e+02	0.0000	10846.0	5.42%	9226.0	4.66%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-53	-1.234e+02	0.0000	547.0	0.27%	257.7	0.13%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-52	-1.210e+02	0.0000	15832.0	7.90%	13882.3	7.01%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-52	-1.200e+02	0.0000	33421.0	16.69%	30562.2	15.44%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-51	-1.183e+02	0.0000	3781.0	1.89%	2896.4	1.46%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-50	-1.167e+02	0.0000	1228.0	0.61%	765.3	0.39%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-48	-1.118e+02	0.0000	7670.0	3.83%	6396.6	3.23%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-47	-1.087e+02	0.0000	8723.0	4.36%	7374.4	3.73%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-45	-1.054e+02	0.0000	4074.0	2.03%	3198.6	1.62%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-45	-1.053e+02	0.0000	27355.0	13.66%	24915.3	12.59%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-43	-1.001e+02	0.0000	296.0	0.15%	115.4	0.06%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-42	-9.768e+01	0.0000	2861.0	1.43%	2166.6	1.09%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-41	-9.662e+01	0.0000	6172.0	3.08%	5113.1	2.58%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-41	-9.553e+01	0.0000	2216.0	1.11%	1620.4	0.82%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-41	-9.442e+01	0.0000	27675.0	13.82%	25334.1	12.80%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-40	-9.358e+01	0.0000	532.0	0.27%	276.1	0.14%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-38	-8.914e+01	0.0000	19875.0	9.92%	17955.5	9.07%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-37	-8.595e+01	0.0000	6069.0	3.03%	5074.1	2.56%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-35	-8.115e+01	0.0000	2810.0	1.40%	2177.9	1.10%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-33	-7.827e+01	0.0000	2295.0	1.15%	1739.6	0.88%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-33	-7.661e+01	0.0000	13252.0	6.62%	11807.7	5.97%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-32	-7.454e+01	0.0000	6278.0	3.13%	5328.1	2.69%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-32	-7.436e+01	0.0000	16319.0	8.15%	14724.4	7.44%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-31	-7.320e+01	0.0000	5510.0	2.75%	4633.2	2.34%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-27	-6.409e+01	0.0000	1284.0	0.64%	918.4	0.46%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-27	-6.287e+01	0.0000	5364.0	2.68%	4558.8	2.30%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-27	-6.236e+01	0.0000	12965.0	6.47%	11663.6	5.89%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-27	-6.228e+01	0.0000	12596.0	6.29%	11315.4	5.72%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-25	-5.943e+01	0.0000	14554.0	7.27%	13197.7	6.67%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-25	-5.824e+01	0.0000	9364.0	4.68%	8307.5	4.20%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-24	-5.696e+01	0.0000	6035.0	3.01%	5213.0	2.63%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-24	-5.672e+01	0.0000	2441.0	1.22%	1944.1	0.98%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-24	-5.596e+01	0.0000	3925.0	1.96%	3282.0	1.66%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-23	-5.356e+01	0.0000	4565.0	2.28%	3880.2	1.96%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-23	-5.312e+01	0.0000	4019.0	2.01%	3384.0	1.71%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-22	-5.165e+01	0.0000	5359.0	2.68%	4623.1	2.34%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-22	-5.156e+01	0.0000	21046.0	10.51%	19489.3	9.85%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-22	-5.105e+01	0.0000	12819.0	6.40%	11636.4	5.88%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-21	-5.060e+01	0.0000	2326.0	1.16%	1867.9	0.94%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-21	-5.051e+01	0.0000	2629.0	1.31%	2138.5	1.08%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-21	-5.017e+01	0.0000	4720.0	2.36%	4043.4	2.04%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-20	-4.789e+01	0.0000	7081.0	3.54%	6253.0	3.16%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-20	-4.632e+01	0.0000	26522.0	13.24%	24837.1	12.55%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-18	-4.145e+01	0.0000	2620.0	1.31%	2173.3	1.10%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-17	-4.100e+01	0.0000	11097.0	5.54%	10107.6	5.11%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-17	-4.083e+01	0.0000	66400.0	33.15%	63816.1	32.24%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-16	-3.779e+01	0.0000	43355.0	21.65%	41338.8	20.89%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-16	-3.743e+01	0.0000	10927.0	5.46%	9985.9	5.05%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-16	-3.733e+01	0.0000	37605.0	18.78%	35745.1	18.06%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-15	-3.542e+01	0.0000	8238.0	4.11%	7453.1	3.77%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-15	-3.483e+01	0.0000	3528.0	1.76%	3042.3	1.54%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-14	-3.380e+01	0.0000	11865.0	5.92%	10923.2	5.52%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-13	-3.150e+01	0.0000	8721.0	4.35%	7954.0	4.02%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-13	-3.066e+01	0.0000	1835.0	0.92%	1517.9	0.77%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-13	-3.001e+01	0.0000	5293.0	2.64%	4725.3	2.39%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-13	-3.001e+01	0.0000	4303.0	2.15%	3797.5	1.92%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-12	-2.907e+01	0.0000	10733.0	5.36%	9901.3	5.00%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-12	-2.865e+01	0.0000	8712.0	4.35%	7977.7	4.03%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-11	-2.685e+01	0.0000	3924.0	1.96%	3468.7	1.75%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-11	-2.581e+01	0.0000	46029.0	22.98%	44233.5	22.35%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-11	-2.572e+01	0.0000	1457.0	0.73%	1200.1	0.61%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-10	-2.474e+01	0.0000	647.0	0.32%	487.1	0.25%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-10	-2.357e+01	0.0000	12412.0	6.20%	11590.1	5.86%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-10	-2.308e+01	0.0000	2642.0	1.32%	2302.3	1.16%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-9	-2.288e+01	0.0000	17890.0	8.93%	16890.7	8.53%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-8	-2.004e+01	0.0000	2207.0	1.10%	1920.9	0.97%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-8	-1.940e+01	0.0000	15753.0	7.87%	14888.1	7.52%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-8	-1.933e+01	0.0000	7363.0	3.68%	6806.2	3.44%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-8	-1.867e+01	0.0000	9855.0	4.92%	9207.2	4.65%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-8	-1.859e+01	0.0000	6832.0	3.41%	6308.1	3.19%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-7	-1.750e+01	0.0000	817.0	0.41%	663.8	0.34%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-7	-1.726e+01	0.0000	1578.0	0.79%	1357.6	0.69%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-7	-1.708e+01	0.0000	1619.0	0.81%	1396.8	0.71%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-7	-1.689e+01	0.0000	5911.0	2.95%	5450.2	2.75%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-7	-1.619e+01	0.0000	71.0	0.04%	35.5	0.02%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-6	-1.523e+01	0.0000	9221.0	4.60%	8653.2	4.37%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-6	-1.511e+01	0.0000	8920.0	4.45%	8366.0	4.23%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-6	-1.477e+01	0.0000	9908.0	4.95%	9324.2	4.71%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-6	-1.431e+01	0.0000	22682.0	11.32%	21740.3	10.98%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-5	-1.305e+01	0.0000	19998.0	9.98%	19158.0	9.68%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-5	-1.272e+01	0.0000	3408.0	1.70%	3115.3	1.57%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-5	-1.170e+01	0.0000	1180.0	0.59%	1026.5	0.52%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-4	-1.142e+01	0.0000	1350.0	0.67%	1186.9	0.60%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-4	-1.140e+01	0.0000	311.0	0.16%	239.4	0.12%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-4	-1.088e+01	0.0000	1397.0	0.70%	1234.1	0.62%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-4	-1.032e+01	0.0001	8170.0	4.08%	7729.2	3.91%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-4	-1.025e+01	0.0001	13034.0	6.51%	12451.2	6.29%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-4	-9.849e+00	0.0001	3697.0	1.85%	3427.1	1.73%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-4	-9.715e+00	0.0001	561.0	0.28%	469.3	0.24%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-4	-9.336e+00	0.0001	3922.0	1.96%	3650.9	1.84%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-4	-9.273e+00	0.0001	2341.0	1.17%	2140.7	1.08%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-3	-7.443e+00	0.0009	2504.0	1.25%	2318.1	1.17%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-7.437e+00	0.0009	10050.0	5.02%	9621.8	4.86%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-2	-6.738e+00	0.0019	746.0	0.37%	658.0	0.33%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-6.716e+00	0.0019	4702.0	2.35%	4446.8	2.25%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-6.349e+00	0.0027	8560.0	4.27%	8200.7	4.14%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-5.608e+00	0.0057	2211.0	1.10%	2063.1	1.04%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-5.414e+00	0.0069	1272.0	0.64%	1167.7	0.59%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-5.342e+00	0.0074	3851.0	1.92%	3650.3	1.84%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-5.051e+00	0.0099	35179.0	17.56%	34346.3	17.35%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-2	-4.942e+00	0.0110	872.0	0.44%	792.5	0.40%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-4.456e+00	0.0177	5286.0	2.64%	5064.2	2.56%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-4.454e+00	0.0177	5706.0	2.85%	5474.0	2.77%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-4.141e+00	0.0241	2694.0	1.35%	2554.7	1.29%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-4.069e+00	0.0259	8319.0	4.15%	8035.5	4.06%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.852e+00	0.0320	192.0	0.10%	163.2	0.08%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.604e+00	0.0409	7900.0	3.94%	7642.8	3.86%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-1	-3.345e+00	0.0527	18940.0	9.46%	18483.2	9.34%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.325e+00	0.0537	2360.0	1.18%	2247.2	1.14%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-3.193e+00	0.0610	2704.0	1.35%	2584.9	1.31%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.406e+00	0.1336	9400.0	4.69%	9164.1	4.63%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-1	-2.388e+00	0.1355	15206.0	7.59%	14872.0	7.51%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.273e+00	0.1515	10650.0	5.32%	10399.4	5.25%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.985e+00	0.2014	1489.0	0.74%	1430.9	0.72%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.711e+00	0.2639	2102.0	1.05%	2036.1	1.03%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.301e+00	0.3963	18198.0	9.09%	17906.8	9.05%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.083e+00	0.4913	114.0	0.06%	108.9	0.06%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-8.731e-01	0.6039	59965.0	29.94%	59215.4	29.92%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.457e-01	0.6186	5957.0	2.97%	5873.3	2.97%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-7.425e-01	0.6836	11315.0	5.65%	11175.3	5.65%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.820e-01	0.7238	420.0	0.21%	415.6	0.21%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.100e-01	0.7752	3471.0	1.73%	3436.4	1.74%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-5.528e-01	0.8181	5075.0	2.53%	5028.5	2.54%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-5.508e-01	0.8181	11121.0	5.55%	11009.8	5.56%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-4.543e-01	0.8968	329.0	0.16%	331.1	0.17%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-3.421e-01	1.0000	407.0	0.20%	413.2	0.21%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.392e-01	1.0000	11680.0	5.83%	11600.6	5.86%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-3.094e-01	1.0000	4853.0	2.42%	4838.5	2.44%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.880e-01	1.0000	1439.0	0.72%	1447.1	0.73%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.880e-01	1.0000	1439.0	0.72%	1447.1	0.73%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.646e-01	1.0000	4595.0	2.29%	4589.3	2.32%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.352e-01	1.0000	534.0	0.27%	546.6	0.28%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-2.110e-01	1.0000	19366.0	9.67%	19253.0	9.73%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.705e-01	1.0000	4701.0	2.35%	4713.3	2.38%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.541e-01	1.0000	30259.0	15.11%	30071.7	15.19%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.495e-01	1.0000	206.0	0.10%	219.7	0.11%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.149e-01	1.0000	21183.0	10.58%	21102.0	10.66%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-7.441e-02	1.0000	9035.0	4.51%	9064.0	4.58%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-6.923e-02	1.0000	3840.0	1.92%	3886.6	1.96%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.086e-02	1.0000	7824.0	3.91%	7866.7	3.97%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.292e-02	1.0000	154.0	0.08%	174.1	0.09%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.802e-02	1.0000	3812.0	1.90%	3895.9	1.97%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.086e-02	1.0000	6752.0	3.37%	6857.9	3.46%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.004e-03	1.0000	6216.0	3.10%	6337.5	3.20%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.773e-03	1.0000	41259.0	20.60%	41225.7	20.83%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.147e-03	1.0000	3148.0	1.57%	3258.1	1.65%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.110e-03	1.0000	1046.0	0.52%	1124.0	0.57%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.939e-03	1.0000	3554.0	1.77%	3675.2	1.86%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.840e-03	1.0000	2537.0	1.27%	2646.0	1.34%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.806e-03	1.0000	12362.0	6.17%	12528.2	6.33%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.085e-03	1.0000	1540.0	0.77%	1643.7	0.83%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.920e-04	1.0000	12257.0	6.12%	12454.3	6.29%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-4.050e-04	1.0000	3766.0	1.88%	3926.7	1.98%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.680e-04	1.0000	498.0	0.25%	575.1	0.29%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.190e-04	1.0000	2810.0	1.40%	2972.1	1.50%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.140e-04	1.0000	2562.0	1.28%	2720.0	1.37%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.500e-05	1.0000	2566.0	1.28%	2735.6	1.38%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.000e-05	1.0000	1284.0	0.64%	1419.4	0.72%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.900e-05	1.0000	4060.0	2.03%	4274.0	2.16%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.200e-05	1.0000	1169.0	0.58%	1303.1	0.66%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.000e-05	1.0000	13733.0	6.86%	14053.8	7.10%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.000e-06	1.0000	951.0	0.47%	1079.8	0.55%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.000e-06	1.0000	820.0	0.41%	946.8	0.48%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.000e-06	1.0000	6151.0	3.07%	6454.3	3.26%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	7401.0	3.70%	7784.2	3.93%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-0.000e+00	1.0000	5802.0	2.90%	6154.1	3.11%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	18773.0	9.37%	19313.5	9.76%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-0.000e+00	1.0000	7440.0	3.71%	7855.9	3.97%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	53.0	0.03%	107.2	0.05%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-0.000e+00	1.0000	3472.0	1.73%	3791.9	1.92%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	1489.0	0.74%	1725.9	0.87%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-0.000e+00	1.0000	761.0	0.38%	953.7	0.48%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-0.000e+00	1.0000	12597.0	6.29%	13200.9	6.67%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-0.000e+00	1.0000	9928.0	4.96%	10526.0	5.32%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-0.000e+00	1.0000	743.0	0.37%	953.3	0.48%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	297.0	0.15%	441.3	0.22%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-0.000e+00	1.0000	957.0	0.48%	1197.8	0.61%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	4870.0	2.43%	5350.6	2.70%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	7170.0	3.58%	7742.1	3.91%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-0.000e+00	1.0000	7669.0	3.83%	8296.1	4.19%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	903.0	0.45%	1228.3	0.62%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	0.000e+00	1.0000	25274.0	12.62%	29407.6	14.86%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	46563.0	23.25%	56905.2	28.75%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	0.000e+00	1.0000	19171.0	9.57%	21483.4	10.85%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	29418.0	14.69%	32928.6	16.64%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	0.000e+00	1.0000	35483.0	17.72%	38125.5	19.26%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	44345.0	22.14%	53130.7	26.84%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	8832.0	4.41%	9827.2	4.97%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	0.000e+00	1.0000	5402.0	2.70%	6294.3	3.18%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	1814.0	0.91%	2427.8	1.23%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	33466.0	16.71%	39926.6	20.17%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	27986.0	13.97%	38661.7	19.53%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	46132.0	23.03%	47501.3	24.00%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	5098.0	2.55%	9774.8	4.94%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	790.0	0.39%	1132.4	0.57%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	15861.0	7.92%	25056.4	12.66%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	9457.0	4.72%	15670.2	7.92%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	7874.0	3.93%	13853.6	7.00%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	4408.0	2.20%	8693.1	4.39%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	13743.0	6.86%	16160.6	8.16%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	40265.0	20.10%	45858.1	23.17%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	22178.0	11.07%	33616.1	16.98%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	44376.0	22.16%	49094.4	24.80%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	0.000e+00	1.0000	35646.0	17.80%	39275.2	19.84%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	32551.0	16.25%	35466.3	17.92%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	1614.0	0.81%	3948.4	1.99%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	8888.0	4.44%	12738.8	6.44%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	17697.0	8.84%	19840.2	10.02%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	9821.0	4.90%	13924.6	7.04%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	0.000e+00	1.0000	32805.0	16.38%	34052.2	17.20%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	58972.0	29.44%	64232.5	32.45%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	41169.0	20.55%	47500.2	24.00%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	46035.0	22.98%	50436.6	25.48%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	49463.0	24.70%	52125.5	26.34%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	20707.0	10.34%	22769.5	11.50%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	26591.0	13.28%	30895.1	15.61%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	0.000e+00	1.0000	1477.0	0.74%	1889.3	0.95%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	1584.0	0.79%	2071.7	1.05%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	13375.0	6.68%	14221.4	7.19%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	290.0	0.14%	469.3	0.24%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	0.000e+00	1.0000	2881.0	1.44%	3346.1	1.69%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	85104.0	42.49%	87857.3	44.39%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	60494.0	30.20%	63643.9	32.16%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	54515.0	27.22%	64867.8	32.77%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	392.0	0.20%	631.1	0.32%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	0.000e+00	1.0000	4513.0	2.25%	6708.8	3.39%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	8893.0	4.44%	15803.6	7.98%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	22253.0	11.11%	26887.1	13.58%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	12172.0	6.08%	18966.0	9.58%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	7005.0	3.50%	11410.0	5.76%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	9215.0	4.60%	13780.6	6.96%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	21846.0	10.91%	29035.3	14.67%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	10715.0	5.35%	13420.0	6.78%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	18541.0	9.26%	26377.5	13.33%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	4608.0	2.30%	5556.8	2.81%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	2875.0	1.44%	4320.3	2.18%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	19425.0	9.70%	20614.3	10.42%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	71036.0	35.47%	74558.8	37.67%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	0.000e+00	1.0000	21064.0	10.52%	22503.7	11.37%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	0.000e+00	1.0000	14695.0	7.34%	15943.8	8.06%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	1404.0	0.70%	1747.0	0.88%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	10011.0	5.00%	12567.1	6.35%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	0.000e+00	1.0000	81041.0	40.46%	81919.0	41.39%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	24044.0	12.00%	33856.0	17.11%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	0.000e+00	1.0000	6075.0	3.03%	6921.7	3.50%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	32427.0	16.19%	44159.0	22.31%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	18258.0	9.12%	26266.9	13.27%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	0.000e+00	1.0000	394.0	0.20%	638.2	0.32%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	1452.0	0.72%	2072.4	1.05%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	34459.0	17.20%	37194.9	18.79%