Homer de novo Motif Results (CTL_Knee_open_peaks_motif/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
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More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 200065
Total background sequences = 197718
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C A G T C T A G T C G A C G A T A C T G G C T A A T C G C G A T T G A C G C T A A G C T G C T A 1e-20032-4.613e+0422.67%3.91%45.1bp (61.5bp)Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer(0.996)
More Information | Similar Motifs Found
motif file (matrix)
2 G T A C A G T C G C T A T A G C G A C T C G T A C T A G C T G A C A T G C T A G A C T G G T A C 1e-4876-1.123e+045.24%0.78%42.0bp (58.1bp)CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer(0.905)
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motif file (matrix)
3 C T G A T C G A G C T A C G A T C T A G T A C G A G T C C G A T A G T C G C A T 1e-1728-3.980e+0348.59%38.76%55.8bp (61.0bp)Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer(0.658)
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motif file (matrix)
4 C T G A C T G A G C T A G C A T C G T A A C G T A C G T A G C T G T A C A G T C 1e-1645-3.789e+0340.83%31.59%55.9bp (58.0bp)NFATC3/MA0625.1/Jaspar(0.897)
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motif file (matrix)
5 G A C T A G C T C A T G A T C G G A T C G C A T C T A G T A C G G T A C G C T A 1e-1520-3.501e+0333.02%24.69%54.5bp (62.7bp)NFIX/MA0671.1/Jaspar(0.947)
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motif file (matrix)
6 G T A C G C T A C A T G A G T C G A T C T A G C C G A T C A T G 1e-1151-2.652e+0364.04%56.04%55.7bp (64.2bp)ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer(0.676)
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motif file (matrix)
7 C A T G C T A G G T C A T C G A C G A T C T A G G A C T C A G T G C A T C T G A 1e-929-2.140e+0333.17%26.57%56.0bp (60.4bp)TEAD2/MA1121.1/Jaspar(0.829)
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motif file (matrix)
8 T A G C G C A T A T C G G A C T T C A G A T C G A C G T G A C T C G A T T A C G 1e-923-2.126e+0322.71%17.02%54.7bp (61.0bp)RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer(0.937)
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motif file (matrix)
9 C T G A C T A G C A T G T A C G G C T A C T A G C A G T C A T G 1e-887-2.044e+0351.22%44.10%56.1bp (61.0bp)KLF4/MA0039.3/Jaspar(0.791)
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motif file (matrix)
10 A C T G A G C T C A G T G C T A C A G T A C T G T G A C G T C A C G T A C T G A 1e-850-1.959e+0331.18%24.98%56.6bp (60.4bp)POU5F1/MA1115.1/Jaspar(0.834)
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motif file (matrix)
11 G C A T C G A T G C A T G T C A G T C A C G T A G T A C C G T A T A C G G T A C 1e-783-1.803e+0337.81%31.48%56.4bp (60.4bp)Foxo1/MA0480.1/Jaspar(0.746)
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motif file (matrix)
12 G T A C C G T A A C G T C G A T G T A C T G C A A C T G G C T A 1e-732-1.686e+0336.65%30.58%57.2bp (62.2bp)PB0178.1_Sox8_2/Jaspar(0.834)
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motif file (matrix)
13 A T G C G A C T A T G C G A C T A T C G C G A T A T C G A C T G C T A G T C A G 1e-717-1.652e+0326.47%21.09%55.9bp (62.1bp)ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer(0.697)
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motif file (matrix)
14 T G A C C A T G T A G C A T G C T G A C C T A G G T A C A C T G A T C G T C A G 1e-599-1.380e+0341.50%35.82%55.6bp (58.0bp)Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer(0.710)
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motif file (matrix)
15 C A T G T A C G T G A C C G T A A C T G A T C G T G A C C G T A A C T G A T G C G T A C G C A T 1e-556-1.282e+0320.65%16.33%54.2bp (63.2bp)Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.860)
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motif file (matrix)
16 C T A G T C G A A G C T C A T G C G T A A G T C T C A G G C A T G T A C T C G A 1e-446-1.029e+033.40%1.88%51.9bp (59.9bp)Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer(0.966)
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motif file (matrix)
17 A C G T A C G T T C G A G T A C A G C T C G T A G C T A A C T G G C T A T C G A 1e-440-1.014e+0315.33%11.95%55.9bp (61.9bp)PB0056.1_Rfxdc2_1/Jaspar(0.712)
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motif file (matrix)
18 A G T C A G T C C G T A A C G T C T A G A C T G G A T C C G T A C G T A A G T C 1e-310-7.140e+020.82%0.27%50.6bp (60.6bp)Rfx1/MA0509.1/Jaspar(0.910)
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motif file (matrix)
19 T C A G T C A G T A C G G T A C T A C G A C T G C T A G T A C G A T G C A G T C C A T G A T C G 1e-242-5.593e+0219.70%16.85%53.9bp (54.8bp)Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer(0.895)
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motif file (matrix)
20 C G A T A C T G T C G A T A G C G C A T A C T G A G C T C T G A T G A C G C T A A T C G G C A T 1e-210-4.858e+026.23%4.69%54.6bp (63.3bp)NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer(0.601)
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motif file (matrix)
21 T A C G C G T A C T G A G C A T A T C G A T C G C G T A T C G A G C A T A T C G A C T G C G T A 1e-99-2.287e+020.13%0.02%51.5bp (64.5bp)TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer(0.696)
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motif file (matrix)
22 A C G T C G T A A C T G A C T G A T C G A G T C C G T A A G T C A C G T A C G T C G T A A G T C 1e-92-2.126e+020.05%0.00%46.1bp (69.0bp)ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer(0.693)
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motif file (matrix)
23 A G C T G T C A T A G C A G T C C T A G A G T C G A C T C G T A T A C G T C G A T G A C A T G C 1e-86-1.985e+020.08%0.01%46.2bp (49.8bp)Smad4/MA1153.1/Jaspar(0.638)
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motif file (matrix)
24 * C G T A A G T C A G T C A G T C A C G T C G T A C G T A A T G C A G T C A G T C A C G T C G T A 1e-2-5.378e+000.01%0.01%53.3bp (43.9bp)PSE(SNAPc)/K562-mStart-Seq/Homer(0.643)
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motif file (matrix)