Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 200067)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 197359)	% of Background Sequences with Motif
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-20095	-4.627e+04	0.0000	47836.0	23.91%	8683.8	4.40%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-19328	-4.451e+04	0.0000	51803.0	25.89%	10793.2	5.46%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-19325	-4.450e+04	0.0000	43851.0	21.92%	7457.8	3.77%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-18881	-4.348e+04	0.0000	46807.0	23.39%	8867.2	4.49%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-18805	-4.330e+04	0.0000	50499.0	25.24%	10509.9	5.32%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-17712	-4.078e+04	0.0000	53054.0	26.52%	12371.3	6.26%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-17283	-3.980e+04	0.0000	35113.0	17.55%	5098.8	2.58%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-15655	-3.605e+04	0.0000	29005.0	14.50%	3665.7	1.86%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-6843	-1.576e+04	0.0000	16950.0	8.47%	2995.3	1.52%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-6502	-1.497e+04	0.0000	13168.0	6.58%	1810.0	0.92%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-4013	-9.241e+03	0.0000	14912.0	7.45%	3874.6	1.96%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2505	-5.769e+03	0.0000	5472.0	2.73%	814.0	0.41%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2391	-5.507e+03	0.0000	5027.0	2.51%	712.8	0.36%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1971	-4.539e+03	0.0000	4459.0	2.23%	691.1	0.35%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-1788	-4.119e+03	0.0000	4163.0	2.08%	667.3	0.34%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1690	-3.892e+03	0.0000	10709.0	5.35%	3988.9	2.02%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1280	-2.948e+03	0.0000	50207.0	25.09%	35931.3	18.19%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1141	-2.629e+03	0.0000	23034.0	11.51%	13872.8	7.02%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1135	-2.614e+03	0.0000	15525.0	7.76%	8223.3	4.16%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1078	-2.483e+03	0.0000	7057.0	3.53%	2662.6	1.35%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-986	-2.271e+03	0.0000	23367.0	11.68%	14676.1	7.43%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-928	-2.137e+03	0.0000	24182.0	12.09%	15552.8	7.87%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-748	-1.723e+03	0.0000	9070.0	4.53%	4563.0	2.31%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-707	-1.629e+03	0.0000	27911.0	13.95%	19623.4	9.93%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-688	-1.585e+03	0.0000	12614.0	6.30%	7313.9	3.70%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-687	-1.583e+03	0.0000	18774.0	9.38%	12144.9	6.15%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-678	-1.562e+03	0.0000	2502.0	1.25%	632.2	0.32%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-665	-1.533e+03	0.0000	14091.0	7.04%	8518.6	4.31%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-660	-1.521e+03	0.0000	23577.0	11.78%	16208.3	8.20%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-619	-1.427e+03	0.0000	40399.0	20.19%	31014.5	15.70%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-609	-1.403e+03	0.0000	23970.0	11.98%	16791.1	8.50%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-604	-1.392e+03	0.0000	28407.0	14.20%	20594.2	10.42%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-577	-1.330e+03	0.0000	105567.0	52.76%	92876.8	47.01%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-573	-1.320e+03	0.0000	27898.0	13.94%	20335.2	10.29%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-545	-1.256e+03	0.0000	17018.0	8.51%	11321.0	5.73%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-535	-1.232e+03	0.0000	24190.0	12.09%	17369.1	8.79%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-531	-1.225e+03	0.0000	17497.0	8.74%	11774.3	5.96%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-526	-1.213e+03	0.0000	18602.0	9.30%	12710.6	6.43%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-515	-1.188e+03	0.0000	24098.0	12.04%	17399.4	8.81%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-481	-1.109e+03	0.0000	20751.0	10.37%	14738.7	7.46%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-475	-1.094e+03	0.0000	24157.0	12.07%	17685.0	8.95%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-463	-1.068e+03	0.0000	26187.0	13.09%	19510.6	9.88%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-462	-1.064e+03	0.0000	19583.0	9.79%	13856.1	7.01%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-460	-1.061e+03	0.0000	19001.0	9.50%	13373.1	6.77%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-454	-1.047e+03	0.0000	17561.0	8.78%	12197.6	6.17%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-450	-1.036e+03	0.0000	3185.0	1.59%	1248.7	0.63%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-446	-1.027e+03	0.0000	2915.0	1.46%	1093.9	0.55%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-445	-1.025e+03	0.0000	22560.0	11.28%	16488.4	8.35%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-431	-9.927e+02	0.0000	19245.0	9.62%	13739.4	6.95%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-425	-9.796e+02	0.0000	21670.0	10.83%	15841.1	8.02%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-422	-9.717e+02	0.0000	15084.0	7.54%	10302.9	5.21%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-408	-9.403e+02	0.0000	17580.0	8.79%	12456.4	6.31%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-400	-9.219e+02	0.0000	3486.0	1.74%	1516.8	0.77%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-399	-9.190e+02	0.0000	33348.0	16.67%	26299.9	13.31%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-389	-8.968e+02	0.0000	28162.0	14.08%	21748.0	11.01%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-373	-8.609e+02	0.0000	42621.0	21.30%	34935.6	17.68%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-367	-8.451e+02	0.0000	14575.0	7.28%	10154.1	5.14%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-361	-8.319e+02	0.0000	22025.0	11.01%	16551.8	8.38%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-348	-8.028e+02	0.0000	9609.0	4.80%	6180.6	3.13%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-327	-7.540e+02	0.0000	29350.0	14.67%	23284.7	11.79%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-324	-7.467e+02	0.0000	20105.0	10.05%	15127.0	7.66%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-320	-7.371e+02	0.0000	5504.0	2.75%	3109.2	1.57%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-317	-7.303e+02	0.0000	20908.0	10.45%	15876.4	8.04%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-313	-7.228e+02	0.0000	2661.0	1.33%	1142.4	0.58%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-310	-7.154e+02	0.0000	50674.0	25.33%	43034.8	21.78%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-301	-6.941e+02	0.0000	8074.0	4.04%	5152.4	2.61%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-297	-6.844e+02	0.0000	23384.0	11.69%	18202.0	9.21%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-291	-6.704e+02	0.0000	52440.0	26.21%	44909.5	22.73%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-281	-6.482e+02	0.0000	16016.0	8.00%	11868.9	6.01%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-262	-6.044e+02	0.0000	22234.0	11.11%	17454.5	8.83%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-253	-5.848e+02	0.0000	29294.0	14.64%	23879.6	12.09%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-250	-5.775e+02	0.0000	11649.0	5.82%	8330.1	4.22%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-248	-5.730e+02	0.0000	16458.0	8.23%	12470.8	6.31%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-248	-5.728e+02	0.0000	31589.0	15.79%	26021.4	13.17%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-245	-5.655e+02	0.0000	24519.0	12.25%	19639.2	9.94%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-244	-5.630e+02	0.0000	48017.0	24.00%	41305.1	20.91%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-242	-5.583e+02	0.0000	20790.0	10.39%	16332.4	8.27%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-241	-5.567e+02	0.0000	13547.0	6.77%	10000.6	5.06%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-240	-5.543e+02	0.0000	33710.0	16.85%	28047.5	14.20%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-237	-5.477e+02	0.0000	13055.0	6.52%	9603.2	4.86%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-236	-5.457e+02	0.0000	33290.0	16.64%	27700.3	14.02%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-231	-5.333e+02	0.0000	7658.0	3.83%	5120.2	2.59%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-227	-5.232e+02	0.0000	13306.0	6.65%	9887.1	5.00%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-222	-5.130e+02	0.0000	23692.0	11.84%	19099.9	9.67%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-216	-4.974e+02	0.0000	709.0	0.35%	162.4	0.08%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-213	-4.920e+02	0.0000	16719.0	8.36%	12958.2	6.56%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-205	-4.733e+02	0.0000	23315.0	11.65%	18919.6	9.58%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-203	-4.688e+02	0.0000	14778.0	7.39%	11330.5	5.74%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-198	-4.579e+02	0.0000	10285.0	5.14%	7482.8	3.79%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-192	-4.426e+02	0.0000	8728.0	4.36%	6206.4	3.14%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-190	-4.395e+02	0.0000	41663.0	20.82%	36018.7	18.23%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-182	-4.193e+02	0.0000	24766.0	12.38%	20470.9	10.36%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-175	-4.052e+02	0.0000	18053.0	9.02%	14458.4	7.32%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-175	-4.052e+02	0.0000	17157.0	8.57%	13657.1	6.91%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-172	-3.981e+02	0.0000	28509.0	14.25%	24004.7	12.15%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-172	-3.963e+02	0.0000	62869.0	31.42%	56436.8	28.57%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-170	-3.919e+02	0.0000	29118.0	14.55%	24597.9	12.45%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-170	-3.915e+02	0.0000	4012.0	2.01%	2475.8	1.25%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-169	-3.900e+02	0.0000	12963.0	6.48%	9999.9	5.06%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-167	-3.859e+02	0.0000	84852.0	42.41%	77795.1	39.38%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-167	-3.855e+02	0.0000	26803.0	13.40%	22496.8	11.39%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-164	-3.788e+02	0.0000	8400.0	4.20%	6092.9	3.08%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-161	-3.722e+02	0.0000	30181.0	15.08%	25683.7	13.00%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-161	-3.719e+02	0.0000	15377.0	7.69%	12197.4	6.17%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-160	-3.706e+02	0.0000	16171.0	8.08%	12910.4	6.53%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-159	-3.665e+02	0.0000	6369.0	3.18%	4420.6	2.24%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-157	-3.631e+02	0.0000	34166.0	17.08%	29440.1	14.90%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-156	-3.606e+02	0.0000	17313.0	8.65%	13973.8	7.07%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-155	-3.583e+02	0.0000	4963.0	2.48%	3288.4	1.66%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-153	-3.526e+02	0.0000	33657.0	16.82%	29026.7	14.69%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-152	-3.520e+02	0.0000	6473.0	3.24%	4540.7	2.30%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-149	-3.447e+02	0.0000	35656.0	17.82%	30942.7	15.66%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-146	-3.369e+02	0.0000	41411.0	20.70%	36404.9	18.43%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-143	-3.293e+02	0.0000	25707.0	12.85%	21774.4	11.02%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-141	-3.254e+02	0.0000	5299.0	2.65%	3630.6	1.84%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-140	-3.225e+02	0.0000	15496.0	7.74%	12498.5	6.33%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-139	-3.219e+02	0.0000	54672.0	27.32%	49119.2	24.86%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-136	-3.152e+02	0.0000	4664.0	2.33%	3133.2	1.59%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-135	-3.118e+02	0.0000	53763.0	26.87%	48325.8	24.46%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-134	-3.097e+02	0.0000	5328.0	2.66%	3689.8	1.87%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-133	-3.079e+02	0.0000	41965.0	20.97%	37122.4	18.79%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-132	-3.041e+02	0.0000	35997.0	17.99%	31516.2	15.95%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-130	-3.015e+02	0.0000	20088.0	10.04%	16754.9	8.48%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-130	-3.006e+02	0.0000	11363.0	5.68%	8902.0	4.51%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-129	-2.991e+02	0.0000	7047.0	3.52%	5158.6	2.61%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-129	-2.975e+02	0.0000	15990.0	7.99%	13050.0	6.61%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-127	-2.931e+02	0.0000	27747.0	13.87%	23867.0	12.08%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-125	-2.880e+02	0.0000	37692.0	18.84%	33220.4	16.82%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-120	-2.779e+02	0.0000	24822.0	12.41%	21238.8	10.75%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-120	-2.765e+02	0.0000	8170.0	4.08%	6189.6	3.13%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-119	-2.762e+02	0.0000	6260.0	3.13%	4552.8	2.30%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-118	-2.739e+02	0.0000	28890.0	14.44%	25047.4	12.68%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-114	-2.642e+02	0.0000	33680.0	16.83%	29602.0	14.98%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-112	-2.581e+02	0.0000	44334.0	22.16%	39735.5	20.11%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-111	-2.578e+02	0.0000	15277.0	7.64%	12583.4	6.37%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-111	-2.566e+02	0.0000	13296.0	6.65%	10799.4	5.47%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-111	-2.565e+02	0.0000	21836.0	10.91%	18596.1	9.41%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-110	-2.536e+02	0.0000	3928.0	1.96%	2663.6	1.35%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-108	-2.504e+02	0.0000	49221.0	24.60%	44462.8	22.51%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-108	-2.501e+02	0.0000	7010.0	3.50%	5268.9	2.67%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-106	-2.461e+02	0.0000	16120.0	8.06%	13405.3	6.79%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-106	-2.444e+02	0.0000	26803.0	13.40%	23283.7	11.79%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-106	-2.444e+02	0.0000	35761.0	17.87%	31703.6	16.05%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-106	-2.443e+02	0.0000	6142.0	3.07%	4540.2	2.30%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-105	-2.425e+02	0.0000	11793.0	5.89%	9510.4	4.81%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-104	-2.414e+02	0.0000	11521.0	5.76%	9271.6	4.69%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-104	-2.398e+02	0.0000	20480.0	10.24%	17438.8	8.83%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-102	-2.363e+02	0.0000	10484.0	5.24%	8366.5	4.23%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-102	-2.358e+02	0.0000	19478.0	9.73%	16536.4	8.37%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-102	-2.358e+02	0.0000	80299.0	40.13%	74658.5	37.79%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-102	-2.351e+02	0.0000	4252.0	2.13%	2971.6	1.50%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-97	-2.248e+02	0.0000	7288.0	3.64%	5590.2	2.83%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-97	-2.239e+02	0.0000	9128.0	4.56%	7210.8	3.65%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-93	-2.147e+02	0.0000	68145.0	34.06%	63035.8	31.91%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-91	-2.116e+02	0.0000	18648.0	9.32%	15907.1	8.05%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-91	-2.108e+02	0.0000	10119.0	5.06%	8145.0	4.12%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-91	-2.097e+02	0.0000	2293.0	1.15%	1438.7	0.73%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-89	-2.071e+02	0.0000	21280.0	10.64%	18372.8	9.30%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-89	-2.062e+02	0.0000	4625.0	2.31%	3356.8	1.70%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-85	-1.963e+02	0.0000	46832.0	23.41%	42642.5	21.58%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-83	-1.913e+02	0.0000	2039.0	1.02%	1271.2	0.64%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-82	-1.907e+02	0.0000	25913.0	12.95%	22812.0	11.55%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-80	-1.853e+02	0.0000	31308.0	15.65%	27939.6	14.14%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-77	-1.793e+02	0.0000	28086.0	14.04%	24941.6	12.62%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-77	-1.792e+02	0.0000	19114.0	9.55%	16535.9	8.37%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-76	-1.761e+02	0.0000	561.0	0.28%	225.4	0.11%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-75	-1.745e+02	0.0000	16820.0	8.41%	14437.6	7.31%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-75	-1.738e+02	0.0000	1357.0	0.68%	777.9	0.39%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-72	-1.679e+02	0.0000	11405.0	5.70%	9501.6	4.81%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-70	-1.632e+02	0.0000	16029.0	8.01%	13774.3	6.97%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-69	-1.594e+02	0.0000	10251.0	5.12%	8495.7	4.30%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-68	-1.571e+02	0.0000	2649.0	1.32%	1827.8	0.93%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-68	-1.571e+02	0.0000	2649.0	1.32%	1827.8	0.93%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-64	-1.485e+02	0.0000	19393.0	9.69%	17002.8	8.61%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-64	-1.484e+02	0.0000	4655.0	2.33%	3553.9	1.80%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-63	-1.468e+02	0.0000	10961.0	5.48%	9206.5	4.66%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-61	-1.426e+02	0.0000	33863.0	16.92%	30737.7	15.56%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-61	-1.406e+02	0.0000	1460.0	0.73%	905.0	0.46%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-59	-1.362e+02	0.0000	3678.0	1.84%	2748.9	1.39%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-54	-1.256e+02	0.0000	7944.0	3.97%	6570.6	3.33%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-52	-1.199e+02	0.0000	13965.0	6.98%	12138.7	6.14%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-50	-1.152e+02	0.0000	2789.0	1.39%	2050.4	1.04%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-49	-1.148e+02	0.0000	33385.0	16.69%	30557.3	15.47%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-49	-1.132e+02	0.0000	5589.0	2.79%	4508.5	2.28%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-45	-1.054e+02	0.0000	2325.0	1.16%	1684.5	0.85%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-45	-1.041e+02	0.0000	33705.0	16.85%	30981.0	15.68%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-42	-9.828e+01	0.0000	7290.0	3.64%	6116.0	3.10%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-42	-9.783e+01	0.0000	307.0	0.15%	123.2	0.06%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-41	-9.649e+01	0.0000	12251.0	6.12%	10706.3	5.42%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-41	-9.644e+01	0.0000	508.0	0.25%	256.4	0.13%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-41	-9.534e+01	0.0000	6058.0	3.03%	5012.1	2.54%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-40	-9.436e+01	0.0000	4967.0	2.48%	4034.2	2.04%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-40	-9.397e+01	0.0000	20086.0	10.04%	18095.6	9.16%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-39	-9.061e+01	0.0000	14820.0	7.41%	13156.0	6.66%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-38	-8.765e+01	0.0000	2149.0	1.07%	1584.3	0.80%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-35	-8.217e+01	0.0000	12773.0	6.38%	11302.5	5.72%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-35	-8.128e+01	0.0000	13575.0	6.78%	12062.6	6.11%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-33	-7.816e+01	0.0000	4058.0	2.03%	3292.1	1.67%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-33	-7.631e+01	0.0000	38585.0	19.28%	36024.2	18.23%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-33	-7.630e+01	0.0000	27378.0	13.68%	25235.4	12.77%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-31	-7.317e+01	0.0000	2327.0	1.16%	1782.7	0.90%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-31	-7.158e+01	0.0000	5375.0	2.69%	4515.8	2.29%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-31	-7.149e+01	0.0000	2674.0	1.34%	2091.8	1.06%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-29	-6.744e+01	0.0000	6068.0	3.03%	5173.4	2.62%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-29	-6.683e+01	0.0000	11838.0	5.92%	10551.1	5.34%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-28	-6.590e+01	0.0000	8278.0	4.14%	7227.4	3.66%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-27	-6.237e+01	0.0000	3857.0	1.93%	3185.0	1.61%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e-26	-6.208e+01	0.0000	67676.0	33.82%	64570.2	32.68%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-26	-6.057e+01	0.0000	11136.0	5.57%	9945.1	5.03%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-26	-5.996e+01	0.0000	2717.0	1.36%	2174.2	1.10%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-24	-5.738e+01	0.0000	8139.0	4.07%	7161.8	3.63%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-24	-5.573e+01	0.0000	5538.0	2.77%	4758.9	2.41%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-23	-5.439e+01	0.0000	5808.0	2.90%	5016.3	2.54%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-23	-5.436e+01	0.0000	4013.0	2.01%	3368.5	1.71%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-23	-5.427e+01	0.0000	12568.0	6.28%	11356.9	5.75%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-23	-5.369e+01	0.0000	2706.0	1.35%	2192.0	1.11%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-22	-5.207e+01	0.0000	6172.0	3.08%	5369.4	2.72%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-21	-4.990e+01	0.0000	8922.0	4.46%	7956.2	4.03%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-20	-4.628e+01	0.0000	9032.0	4.51%	8092.4	4.10%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-19	-4.480e+01	0.0000	5331.0	2.66%	4641.0	2.35%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-19	-4.466e+01	0.0000	44245.0	22.11%	42033.0	21.28%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-18	-4.343e+01	0.0000	9311.0	4.65%	8382.7	4.24%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-18	-4.188e+01	0.0000	13006.0	6.50%	11905.1	6.03%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-18	-4.187e+01	0.0000	1452.0	0.73%	1128.6	0.57%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-18	-4.154e+01	0.0000	4725.0	2.36%	4101.3	2.08%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-17	-4.037e+01	0.0000	1472.0	0.74%	1151.8	0.58%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-17	-3.951e+01	0.0000	10599.0	5.30%	9643.0	4.88%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-17	-3.940e+01	0.0000	15760.0	7.88%	14567.9	7.37%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-17	-3.923e+01	0.0000	4618.0	2.31%	4018.8	2.03%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-16	-3.889e+01	0.0000	21105.0	10.55%	19710.0	9.98%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-16	-3.746e+01	0.0000	2383.0	1.19%	1977.6	1.00%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-15	-3.604e+01	0.0000	1907.0	0.95%	1555.1	0.79%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-15	-3.548e+01	0.0000	1220.0	0.61%	948.5	0.48%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-15	-3.536e+01	0.0000	26352.0	13.17%	24834.3	12.57%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-14	-3.413e+01	0.0000	11341.0	5.67%	10410.1	5.27%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-12	-2.985e+01	0.0000	2362.0	1.18%	1999.5	1.01%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-12	-2.973e+01	0.0000	3919.0	1.96%	3438.5	1.74%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-12	-2.880e+01	0.0000	12617.0	6.31%	11700.2	5.92%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-12	-2.857e+01	0.0000	1561.0	0.78%	1279.4	0.65%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-11	-2.648e+01	0.0000	10164.0	5.08%	9383.8	4.75%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-11	-2.635e+01	0.0000	1378.0	0.69%	1125.8	0.57%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-11	-2.565e+01	0.0000	4176.0	2.09%	3711.4	1.88%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-11	-2.554e+01	0.0000	641.0	0.32%	479.9	0.24%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-10	-2.493e+01	0.0000	3539.0	1.77%	3121.4	1.58%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-10	-2.324e+01	0.0000	69.0	0.03%	29.0	0.01%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-9	-2.279e+01	0.0000	2687.0	1.34%	2344.6	1.19%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-9	-2.240e+01	0.0000	8756.0	4.38%	8091.9	4.10%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-9	-2.217e+01	0.0000	46982.0	23.48%	45230.5	22.89%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-9	-2.133e+01	0.0000	9103.0	4.55%	8438.7	4.27%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-9	-2.083e+01	0.0000	15894.0	7.94%	14985.5	7.59%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-8	-2.036e+01	0.0000	7537.0	3.77%	6953.0	3.52%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e-8	-2.006e+01	0.0000	6024.0	3.01%	5514.5	2.79%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-8	-1.986e+01	0.0000	10003.0	5.00%	9323.5	4.72%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-8	-1.924e+01	0.0000	3808.0	1.90%	3423.5	1.73%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-8	-1.908e+01	0.0000	3852.0	1.93%	3466.6	1.75%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-7	-1.831e+01	0.0000	35425.0	17.70%	34042.0	17.23%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-7	-1.802e+01	0.0000	20084.0	10.04%	19103.2	9.67%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-7	-1.751e+01	0.0000	9991.0	4.99%	9349.3	4.73%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-7	-1.653e+01	0.0000	8601.0	4.30%	8028.0	4.06%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-7	-1.650e+01	0.0000	22974.0	11.48%	21949.0	11.11%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-7	-1.622e+01	0.0000	4718.0	2.36%	4317.5	2.19%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-6	-1.518e+01	0.0000	1574.0	0.79%	1366.1	0.69%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-5	-1.342e+01	0.0000	17933.0	8.96%	17123.3	8.67%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-5	-1.303e+01	0.0000	15531.0	7.76%	14798.7	7.49%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-5	-1.241e+01	0.0000	19147.0	9.57%	18331.4	9.28%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-5	-1.201e+01	0.0000	567.0	0.28%	463.1	0.23%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-4	-1.088e+01	0.0000	8335.0	4.17%	7871.9	3.98%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-4	-1.007e+01	0.0001	851.0	0.43%	732.2	0.37%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-4	-1.004e+01	0.0001	8088.0	4.04%	7649.9	3.87%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-4	-9.869e+00	0.0001	1171.0	0.59%	1030.1	0.52%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-3	-8.774e+00	0.0002	6990.0	3.49%	6613.4	3.35%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-3	-8.740e+00	0.0003	41970.0	20.98%	40796.7	20.65%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-3	-8.398e+00	0.0004	757.0	0.38%	656.2	0.33%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-3	-7.605e+00	0.0008	1265.0	0.63%	1137.7	0.58%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-7.542e+00	0.0008	11930.0	5.96%	11440.4	5.79%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-3	-7.128e+00	0.0012	2630.0	1.31%	2441.7	1.24%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-3	-6.922e+00	0.0015	884.0	0.44%	785.2	0.40%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-6.755e+00	0.0018	13246.0	6.62%	12747.1	6.45%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-6.455e+00	0.0024	2034.0	1.02%	1880.7	0.95%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-2	-6.367e+00	0.0026	201.0	0.10%	160.1	0.08%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-5.624e+00	0.0055	3953.0	1.98%	3740.7	1.89%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-5.561e+00	0.0058	3369.0	1.68%	3177.4	1.61%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-2	-4.659e+00	0.0143	2695.0	1.35%	2543.9	1.29%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-4.416e+00	0.0182	2305.0	1.15%	2171.9	1.10%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-4.046e+00	0.0263	58788.0	29.38%	57623.5	29.17%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.906e+00	0.0301	2165.0	1.08%	2045.5	1.04%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-3.680e+00	0.0376	296.0	0.15%	260.6	0.13%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.175e+00	0.0621	5345.0	2.67%	5155.2	2.61%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-2.713e+00	0.0982	2322.0	1.16%	2222.1	1.12%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.507e+00	0.1203	21217.0	10.60%	20760.4	10.51%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.194e+00	0.1640	402.0	0.20%	373.9	0.19%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-2.193e+00	0.1640	10486.0	5.24%	10234.5	5.18%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.798e+00	0.2421	30514.0	15.25%	29976.0	15.17%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.683e+00	0.2705	11506.0	5.75%	11269.9	5.70%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.616e+00	0.2884	19712.0	9.85%	19352.6	9.80%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.584e+00	0.2968	110.0	0.05%	100.9	0.05%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.256e+00	0.4104	5216.0	2.61%	5110.4	2.59%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.215e+00	0.4260	18373.0	9.18%	18073.3	9.15%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.065e+00	0.4935	2295.0	1.15%	2247.1	1.14%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.578e-01	0.6051	9200.0	4.60%	9066.6	4.59%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.194e-01	0.6925	2234.0	1.12%	2204.2	1.12%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.670e-01	0.7274	8458.0	4.23%	8354.0	4.23%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.622e-01	0.7285	6000.0	3.00%	5927.7	3.00%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.285e-01	0.7509	5863.0	2.93%	5795.5	2.93%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.497e-01	0.8099	6411.0	3.20%	6345.4	3.21%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-5.043e-01	0.8447	529.0	0.26%	528.9	0.27%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-3.701e-01	0.9629	4786.0	2.39%	4759.0	2.41%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.462e-01	0.9830	3157.0	1.58%	3147.2	1.59%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.967e-01	1.0000	11499.0	5.75%	11422.0	5.78%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.535e-01	1.0000	1453.0	0.73%	1463.5	0.74%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.535e-01	1.0000	1453.0	0.73%	1463.5	0.74%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-2.529e-01	1.0000	204.0	0.10%	212.0	0.11%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.873e-01	1.0000	9563.0	4.78%	9532.6	4.83%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.365e-01	1.0000	313.0	0.16%	329.7	0.17%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.271e-01	1.0000	1458.0	0.73%	1484.9	0.75%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.249e-01	1.0000	2387.0	1.19%	2414.3	1.22%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.105e-01	1.0000	4677.0	2.34%	4702.2	2.38%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.052e-01	1.0000	6236.0	3.12%	6256.0	3.17%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.041e-02	1.0000	4685.0	2.34%	4731.2	2.39%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-5.052e-02	1.0000	6796.0	3.40%	6843.3	3.46%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-3.436e-02	1.0000	3785.0	1.89%	3848.9	1.95%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.381e-02	1.0000	149.0	0.07%	172.3	0.09%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.425e-02	1.0000	3489.0	1.74%	3573.1	1.81%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-8.824e-03	1.0000	779.0	0.39%	836.1	0.42%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.501e-03	1.0000	428.0	0.21%	475.4	0.24%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.835e-03	1.0000	1556.0	0.78%	1636.4	0.83%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.818e-03	1.0000	12389.0	6.19%	12503.9	6.33%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.394e-03	1.0000	7827.0	3.91%	7972.6	4.04%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.130e-03	1.0000	1324.0	0.66%	1412.6	0.72%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.582e-03	1.0000	2644.0	1.32%	2762.1	1.40%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-1.540e-03	1.0000	12494.0	6.24%	12655.1	6.41%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.139e-03	1.0000	3829.0	1.91%	3968.5	2.01%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-7.750e-04	1.0000	492.0	0.25%	558.6	0.28%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.600e-05	1.0000	3560.0	1.78%	3756.4	1.90%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.500e-05	1.0000	3769.0	1.88%	3970.8	2.01%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.800e-05	1.0000	55.0	0.03%	90.5	0.05%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.000e-05	1.0000	2483.0	1.24%	2666.4	1.35%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.000e-06	1.0000	3278.0	1.64%	3498.6	1.77%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.000e-06	1.0000	4991.0	2.49%	5263.7	2.66%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.000e-06	1.0000	19824.0	9.91%	20219.6	10.23%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.000e-06	1.0000	13257.0	6.63%	13629.7	6.90%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.000e-06	1.0000	19183.0	9.59%	19580.2	9.91%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	1035.0	0.52%	1187.1	0.60%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-0.000e+00	1.0000	922.0	0.46%	1070.7	0.54%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	1506.0	0.75%	1711.7	0.87%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-0.000e+00	1.0000	5666.0	2.83%	6023.8	3.05%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-0.000e+00	1.0000	4189.0	2.09%	4508.6	2.28%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	7452.0	3.72%	7855.7	3.98%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-0.000e+00	1.0000	2593.0	1.30%	2863.7	1.45%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-0.000e+00	1.0000	81602.0	40.78%	81860.8	41.44%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-0.000e+00	1.0000	1076.0	0.54%	1269.9	0.64%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	13756.0	6.88%	14270.5	7.22%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-0.000e+00	1.0000	7653.0	3.82%	8089.3	4.09%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-0.000e+00	1.0000	32800.0	16.39%	33412.4	16.91%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-0.000e+00	1.0000	937.0	0.47%	1133.0	0.57%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-0.000e+00	1.0000	7172.0	3.58%	7640.1	3.87%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-0.000e+00	1.0000	21798.0	10.89%	22495.2	11.39%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	299.0	0.15%	435.8	0.22%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-0.000e+00	1.0000	6273.0	3.14%	6779.6	3.43%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-0.000e+00	1.0000	737.0	0.37%	947.5	0.48%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	826.0	0.41%	1134.0	0.57%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	0.000e+00	1.0000	26161.0	13.07%	30086.6	15.23%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	46570.0	23.28%	57406.6	29.06%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	0.000e+00	1.0000	19551.0	9.77%	21500.9	10.88%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	0.000e+00	1.0000	12116.0	6.06%	13008.8	6.58%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	29807.0	14.90%	33148.3	16.78%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	0.000e+00	1.0000	35853.0	17.92%	38196.5	19.33%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	44864.0	22.42%	52893.9	26.77%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	8415.0	4.21%	9423.8	4.77%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	0.000e+00	1.0000	5207.0	2.60%	6086.9	3.08%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	1815.0	0.91%	2405.3	1.22%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	34760.0	17.37%	40340.0	20.42%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	29244.0	14.62%	39133.7	19.81%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	46820.0	23.40%	47836.2	24.21%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	5208.0	2.60%	9487.3	4.80%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	756.0	0.38%	1100.9	0.56%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	15886.0	7.94%	24367.2	12.33%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	9596.0	4.80%	15178.0	7.68%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	7955.0	3.98%	13423.7	6.79%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	4525.0	2.26%	8474.9	4.29%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	13695.0	6.84%	16266.8	8.23%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	40421.0	20.20%	46260.5	23.42%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	22510.0	11.25%	33556.8	16.99%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	45758.0	22.87%	49666.8	25.14%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	6843.0	3.42%	7504.6	3.80%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	0.000e+00	1.0000	35151.0	17.57%	38372.8	19.42%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	32872.0	16.43%	35504.9	17.97%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	1670.0	0.83%	3948.5	2.00%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	9047.0	4.52%	12803.7	6.48%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	17727.0	8.86%	19785.2	10.01%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	9871.0	4.93%	13848.2	7.01%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	59175.0	29.57%	64170.2	32.48%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	41413.0	20.70%	47449.5	24.02%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	46218.0	23.10%	50072.2	25.34%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	49598.0	24.79%	52381.7	26.51%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	21045.0	10.52%	22677.4	11.48%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	26940.0	13.46%	31016.4	15.70%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	0.000e+00	1.0000	1451.0	0.73%	1910.2	0.97%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	1548.0	0.77%	2007.8	1.02%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	281.0	0.14%	451.1	0.23%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	0.000e+00	1.0000	2807.0	1.40%	3313.2	1.68%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	85141.0	42.55%	87795.6	44.44%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	0.000e+00	1.0000	9533.0	4.76%	10233.8	5.18%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	62105.0	31.04%	64254.0	32.52%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	54757.0	27.37%	64657.8	32.73%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	411.0	0.21%	614.7	0.31%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	0.000e+00	1.0000	4623.0	2.31%	6756.0	3.42%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	9451.0	4.72%	16281.2	8.24%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	21964.0	10.98%	26595.1	13.46%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	12026.0	6.01%	18433.2	9.33%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	6793.0	3.40%	11077.9	5.61%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	9111.0	4.55%	13402.3	6.78%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	21522.0	10.76%	28516.6	14.43%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	10603.0	5.30%	13185.1	6.67%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	18050.0	9.02%	25660.1	12.99%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	4580.0	2.29%	5475.0	2.77%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	2909.0	1.45%	4203.3	2.13%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	72149.0	36.06%	74720.6	37.82%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	0.000e+00	1.0000	14820.0	7.41%	15843.4	8.02%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	1413.0	0.71%	1780.4	0.90%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	10115.0	5.06%	12642.5	6.40%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	23894.0	11.94%	32905.5	16.66%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	33632.0	16.81%	44517.8	22.53%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	18969.0	9.48%	26474.3	13.40%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	0.000e+00	1.0000	368.0	0.18%	678.2	0.34%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	1454.0	0.73%	2014.9	1.02%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	34909.0	17.45%	37463.6	18.96%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	0.000e+00	1.0000	716.0	0.36%	949.6	0.48%