Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 198138)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 195280)	% of Background Sequences with Motif
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-21019	-4.840e+04	0.0000	54270.0	27.39%	10935.7	5.60%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-20804	-4.790e+04	0.0000	48963.0	24.71%	8792.3	4.50%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-20073	-4.622e+04	0.0000	52668.0	26.58%	10750.4	5.51%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-19706	-4.538e+04	0.0000	56486.0	28.51%	12726.1	6.52%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-19322	-4.449e+04	0.0000	48138.0	24.29%	9192.1	4.71%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-18954	-4.364e+04	0.0000	44335.0	22.38%	7814.1	4.00%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-15353	-3.535e+04	0.0000	34082.0	17.20%	5508.0	2.82%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-12622	-2.906e+04	0.0000	26797.0	13.52%	4029.8	2.06%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-6598	-1.519e+04	0.0000	17122.0	8.64%	3180.5	1.63%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-5166	-1.190e+04	0.0000	11418.0	5.76%	1742.8	0.89%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-3207	-7.385e+03	0.0000	13003.0	6.56%	3603.4	1.85%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2178	-5.015e+03	0.0000	5227.0	2.64%	868.8	0.44%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2146	-4.943e+03	0.0000	4718.0	2.38%	705.1	0.36%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1783	-4.106e+03	0.0000	4309.0	2.17%	720.4	0.37%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1697	-3.908e+03	0.0000	11192.0	5.65%	4260.0	2.18%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-1670	-3.847e+03	0.0000	3829.0	1.93%	601.3	0.31%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1311	-3.020e+03	0.0000	24307.0	12.27%	14293.6	7.32%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1116	-2.570e+03	0.0000	7071.0	3.57%	2614.8	1.34%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1033	-2.380e+03	0.0000	48788.0	24.62%	35909.1	18.39%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-971	-2.238e+03	0.0000	42959.0	21.68%	31136.6	15.94%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-854	-1.967e+03	0.0000	26249.0	13.25%	17516.3	8.97%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-824	-1.898e+03	0.0000	21923.0	11.06%	14112.9	7.23%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-816	-1.881e+03	0.0000	13224.0	6.67%	7375.0	3.78%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-775	-1.786e+03	0.0000	19750.0	9.97%	12559.2	6.43%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-756	-1.741e+03	0.0000	29950.0	15.12%	21072.3	10.79%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-749	-1.725e+03	0.0000	28586.0	14.43%	19952.1	10.22%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-720	-1.658e+03	0.0000	14719.0	7.43%	8805.6	4.51%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-704	-1.623e+03	0.0000	35956.0	18.15%	26518.3	13.58%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-691	-1.593e+03	0.0000	11584.0	5.85%	6517.5	3.34%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-668	-1.540e+03	0.0000	11833.0	5.97%	6771.5	3.47%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-597	-1.377e+03	0.0000	76491.0	38.60%	64441.3	33.00%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-593	-1.366e+03	0.0000	31929.0	16.11%	23672.3	12.12%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-589	-1.356e+03	0.0000	18329.0	9.25%	12178.6	6.24%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-584	-1.345e+03	0.0000	3482.0	1.76%	1236.3	0.63%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-567	-1.308e+03	0.0000	24139.0	12.18%	17119.9	8.77%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-565	-1.301e+03	0.0000	20399.0	10.29%	13994.7	7.17%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-548	-1.262e+03	0.0000	18860.0	9.52%	12800.7	6.55%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-546	-1.258e+03	0.0000	29966.0	15.12%	22250.6	11.39%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-539	-1.242e+03	0.0000	14623.0	7.38%	9392.6	4.81%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-537	-1.238e+03	0.0000	24837.0	12.53%	17877.2	9.15%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-529	-1.220e+03	0.0000	2685.0	1.36%	859.3	0.44%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-522	-1.202e+03	0.0000	15926.0	8.04%	10515.1	5.38%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-513	-1.182e+03	0.0000	105207.0	53.10%	93049.3	47.65%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-504	-1.161e+03	0.0000	17360.0	8.76%	11769.6	6.03%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-502	-1.156e+03	0.0000	20318.0	10.25%	14241.1	7.29%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-465	-1.071e+03	0.0000	24686.0	12.46%	18169.7	9.30%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-445	-1.026e+03	0.0000	25817.0	13.03%	19271.9	9.87%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-445	-1.026e+03	0.0000	9017.0	4.55%	5349.8	2.74%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-445	-1.026e+03	0.0000	7827.0	3.95%	4452.7	2.28%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-441	-1.017e+03	0.0000	17059.0	8.61%	11824.8	6.06%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-427	-9.849e+02	0.0000	20286.0	10.24%	14618.9	7.49%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-426	-9.813e+02	0.0000	12756.0	6.44%	8365.5	4.28%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-411	-9.479e+02	0.0000	18033.0	9.10%	12798.3	6.55%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-407	-9.375e+02	0.0000	18103.0	9.14%	12882.7	6.60%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-399	-9.190e+02	0.0000	6657.0	3.36%	3722.7	1.91%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-397	-9.149e+02	0.0000	2021.0	1.02%	648.8	0.33%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-392	-9.026e+02	0.0000	6948.0	3.51%	3959.9	2.03%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-387	-8.920e+02	0.0000	16376.0	8.26%	11535.6	5.91%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-368	-8.480e+02	0.0000	22618.0	11.41%	16992.6	8.70%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-359	-8.270e+02	0.0000	31634.0	15.97%	25035.6	12.82%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-353	-8.142e+02	0.0000	15360.0	7.75%	10864.8	5.56%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-350	-8.069e+02	0.0000	16069.0	8.11%	11479.9	5.88%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-338	-7.799e+02	0.0000	27067.0	13.66%	21118.0	10.81%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-337	-7.761e+02	0.0000	39258.0	19.81%	32137.8	16.46%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-336	-7.755e+02	0.0000	19702.0	9.94%	14669.5	7.51%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-335	-7.731e+02	0.0000	18658.0	9.42%	13775.4	7.05%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-314	-7.247e+02	0.0000	19822.0	10.00%	14919.5	7.64%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-313	-7.219e+02	0.0000	68216.0	34.43%	59495.5	30.47%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-311	-7.181e+02	0.0000	47217.0	23.83%	39729.9	20.34%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-311	-7.175e+02	0.0000	30454.0	15.37%	24369.7	12.48%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-304	-7.015e+02	0.0000	13711.0	6.92%	9747.0	4.99%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-304	-7.012e+02	0.0000	16980.0	8.57%	12529.2	6.42%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-302	-6.965e+02	0.0000	15684.0	7.92%	11432.9	5.85%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-302	-6.964e+02	0.0000	14128.0	7.13%	10111.3	5.18%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-295	-6.798e+02	0.0000	12949.0	6.54%	9159.3	4.69%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-290	-6.696e+02	0.0000	43328.0	21.87%	36342.9	18.61%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-290	-6.693e+02	0.0000	12419.0	6.27%	8740.2	4.48%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-280	-6.466e+02	0.0000	13543.0	6.83%	9741.6	4.99%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-279	-6.442e+02	0.0000	11628.0	5.87%	8138.6	4.17%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-277	-6.390e+02	0.0000	40252.0	20.31%	33637.5	17.23%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-273	-6.289e+02	0.0000	28570.0	14.42%	23007.1	11.78%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-271	-6.246e+02	0.0000	20270.0	10.23%	15620.8	8.00%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-261	-6.011e+02	0.0000	32009.0	16.15%	26239.3	13.44%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-246	-5.671e+02	0.0000	7628.0	3.85%	5020.5	2.57%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-243	-5.595e+02	0.0000	18801.0	9.49%	14541.9	7.45%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-239	-5.508e+02	0.0000	19048.0	9.61%	14788.5	7.57%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-232	-5.344e+02	0.0000	22212.0	11.21%	17656.3	9.04%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-229	-5.281e+02	0.0000	12798.0	6.46%	9420.6	4.82%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-225	-5.202e+02	0.0000	24091.0	12.16%	19396.1	9.93%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-221	-5.091e+02	0.0000	84622.0	42.71%	76561.7	39.21%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-220	-5.071e+02	0.0000	36100.0	18.22%	30423.2	15.58%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-212	-4.902e+02	0.0000	15690.0	7.92%	12038.4	6.16%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-208	-4.812e+02	0.0000	44946.0	22.68%	38799.3	19.87%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-207	-4.788e+02	0.0000	4332.0	2.19%	2581.6	1.32%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-204	-4.713e+02	0.0000	14689.0	7.41%	11224.9	5.75%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-200	-4.624e+02	0.0000	29056.0	14.66%	24154.3	12.37%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-196	-4.526e+02	0.0000	45805.0	23.12%	39768.9	20.36%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-188	-4.340e+02	0.0000	12360.0	6.24%	9316.0	4.77%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-180	-4.163e+02	0.0000	7664.0	3.87%	5370.9	2.75%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-180	-4.151e+02	0.0000	12745.0	6.43%	9709.0	4.97%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-178	-4.107e+02	0.0000	8237.0	4.16%	5863.0	3.00%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-167	-3.855e+02	0.0000	18429.0	9.30%	14848.4	7.60%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-165	-3.810e+02	0.0000	27904.0	14.08%	23491.6	12.03%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-165	-3.806e+02	0.0000	4330.0	2.19%	2737.8	1.40%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-163	-3.769e+02	0.0000	5971.0	3.01%	4062.3	2.08%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-158	-3.661e+02	0.0000	16419.0	8.29%	13126.5	6.72%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-155	-3.579e+02	0.0000	21353.0	10.78%	17609.0	9.02%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-154	-3.556e+02	0.0000	15198.0	7.67%	12078.7	6.19%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-154	-3.556e+02	0.0000	55921.0	28.22%	49983.7	25.60%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-153	-3.526e+02	0.0000	23927.0	12.08%	19982.3	10.23%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-152	-3.515e+02	0.0000	5442.0	2.75%	3684.6	1.89%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-152	-3.513e+02	0.0000	41654.0	21.02%	36477.7	18.68%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-150	-3.472e+02	0.0000	30032.0	15.16%	25636.9	13.13%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-150	-3.465e+02	0.0000	8634.0	4.36%	6368.3	3.26%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-148	-3.413e+02	0.0000	64016.0	32.31%	57846.2	29.62%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-146	-3.379e+02	0.0000	3220.0	1.63%	1945.3	1.00%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-146	-3.379e+02	0.0000	3220.0	1.63%	1945.3	1.00%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-140	-3.231e+02	0.0000	33372.0	16.84%	28884.7	14.79%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-137	-3.172e+02	0.0000	20816.0	10.51%	17312.2	8.87%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-137	-3.171e+02	0.0000	15055.0	7.60%	12103.6	6.20%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-136	-3.141e+02	0.0000	24444.0	12.34%	20653.7	10.58%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-128	-2.965e+02	0.0000	19192.0	9.69%	15932.0	8.16%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-128	-2.953e+02	0.0000	28139.0	14.20%	24175.8	12.38%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-127	-2.947e+02	0.0000	6702.0	3.38%	4868.1	2.49%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-126	-2.924e+02	0.0000	2195.0	1.11%	1238.1	0.63%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-125	-2.887e+02	0.0000	19042.0	9.61%	15833.2	8.11%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-124	-2.870e+02	0.0000	1974.0	1.00%	1083.2	0.55%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-124	-2.869e+02	0.0000	50111.0	25.29%	44946.1	23.02%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-123	-2.840e+02	0.0000	15531.0	7.84%	12671.9	6.49%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-122	-2.828e+02	0.0000	10508.0	5.30%	8197.5	4.20%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-121	-2.805e+02	0.0000	17090.0	8.62%	14097.9	7.22%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-121	-2.805e+02	0.0000	2520.0	1.27%	1498.4	0.77%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-121	-2.802e+02	0.0000	10982.0	5.54%	8624.7	4.42%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-117	-2.715e+02	0.0000	26588.0	13.42%	22875.4	11.71%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-116	-2.672e+02	0.0000	2259.0	1.14%	1320.8	0.68%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-115	-2.662e+02	0.0000	15252.0	7.70%	12499.5	6.40%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-113	-2.609e+02	0.0000	6350.0	3.20%	4662.7	2.39%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-111	-2.576e+02	0.0000	81094.0	40.93%	75098.0	38.46%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-109	-2.522e+02	0.0000	4527.0	2.28%	3153.7	1.61%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-109	-2.517e+02	0.0000	4604.0	2.32%	3218.7	1.65%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-107	-2.478e+02	0.0000	14475.0	7.31%	11881.6	6.08%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-107	-2.476e+02	0.0000	25290.0	12.76%	21813.5	11.17%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-106	-2.458e+02	0.0000	19881.0	10.03%	16822.5	8.61%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-106	-2.445e+02	0.0000	3377.0	1.70%	2231.7	1.14%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-104	-2.404e+02	0.0000	47742.0	24.09%	43056.0	22.05%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-103	-2.384e+02	0.0000	11724.0	5.92%	9448.7	4.84%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-103	-2.380e+02	0.0000	32086.0	16.19%	28231.6	14.46%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-102	-2.369e+02	0.0000	14602.0	7.37%	12047.1	6.17%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-98	-2.266e+02	0.0000	2460.0	1.24%	1537.5	0.79%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-98	-2.260e+02	0.0000	9988.0	5.04%	7951.1	4.07%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-96	-2.223e+02	0.0000	3200.0	1.61%	2133.5	1.09%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-94	-2.177e+02	0.0000	19873.0	10.03%	16973.0	8.69%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-94	-2.175e+02	0.0000	5152.0	2.60%	3765.7	1.93%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-94	-2.174e+02	0.0000	2487.0	1.26%	1575.0	0.81%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-93	-2.148e+02	0.0000	6758.0	3.41%	5152.3	2.64%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-92	-2.126e+02	0.0000	16115.0	8.13%	13547.2	6.94%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-89	-2.059e+02	0.0000	32526.0	16.42%	28880.9	14.79%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-87	-2.005e+02	0.0000	35282.0	17.81%	31529.0	16.15%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-84	-1.954e+02	0.0000	3768.0	1.90%	2659.5	1.36%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-84	-1.952e+02	0.0000	3120.0	1.57%	2125.5	1.09%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-81	-1.883e+02	0.0000	10482.0	5.29%	8552.9	4.38%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-81	-1.881e+02	0.0000	6574.0	3.32%	5082.9	2.60%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-78	-1.805e+02	0.0000	10940.0	5.52%	9001.6	4.61%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-77	-1.776e+02	0.0000	9563.0	4.83%	7774.6	3.98%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-76	-1.772e+02	0.0000	14751.0	7.44%	12490.2	6.40%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-76	-1.771e+02	0.0000	26888.0	13.57%	23786.5	12.18%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-76	-1.758e+02	0.0000	26451.0	13.35%	23385.7	11.98%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-75	-1.734e+02	0.0000	8825.0	4.45%	7131.6	3.65%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-75	-1.730e+02	0.0000	16937.0	8.55%	14528.1	7.44%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-74	-1.714e+02	0.0000	2764.0	1.39%	1886.2	0.97%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-72	-1.669e+02	0.0000	27953.0	14.11%	24868.5	12.73%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-71	-1.639e+02	0.0000	3293.0	1.66%	2341.3	1.20%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-70	-1.625e+02	0.0000	32610.0	16.46%	29311.1	15.01%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-70	-1.612e+02	0.0000	43197.0	21.80%	39418.8	20.19%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-69	-1.591e+02	0.0000	19650.0	9.92%	17137.2	8.78%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-68	-1.579e+02	0.0000	21676.0	10.94%	19038.2	9.75%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-68	-1.567e+02	0.0000	5275.0	2.66%	4057.6	2.08%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-67	-1.565e+02	0.0000	35402.0	17.87%	32018.0	16.40%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-65	-1.509e+02	0.0000	10553.0	5.33%	8796.4	4.50%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-64	-1.486e+02	0.0000	1510.0	0.76%	929.9	0.48%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-64	-1.480e+02	0.0000	411.0	0.21%	153.5	0.08%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-63	-1.462e+02	0.0000	4190.0	2.11%	3152.8	1.61%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-62	-1.432e+02	0.0000	39133.0	19.75%	35706.5	18.28%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-59	-1.367e+02	0.0000	7518.0	3.79%	6122.1	3.13%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-58	-1.343e+02	0.0000	40502.0	20.44%	37109.8	19.00%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-53	-1.228e+02	0.0000	33838.0	17.08%	30852.9	15.80%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-53	-1.228e+02	0.0000	15230.0	7.69%	13272.3	6.80%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-53	-1.224e+02	0.0000	39859.0	20.12%	36620.0	18.75%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-52	-1.209e+02	0.0000	11722.0	5.92%	10035.7	5.14%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-50	-1.171e+02	0.0000	6159.0	3.11%	4992.9	2.56%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-49	-1.142e+02	0.0000	5019.0	2.53%	3989.7	2.04%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-49	-1.130e+02	0.0000	2819.0	1.42%	2078.5	1.06%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-48	-1.112e+02	0.0000	11122.0	5.61%	9542.5	4.89%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-48	-1.112e+02	0.0000	6280.0	3.17%	5127.6	2.63%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-44	-1.013e+02	0.0000	27561.0	13.91%	25086.1	12.85%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-43	-1.003e+02	0.0000	526.0	0.27%	264.0	0.14%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-41	-9.591e+01	0.0000	37682.0	19.02%	34835.5	17.84%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-41	-9.484e+01	0.0000	10584.0	5.34%	9151.8	4.69%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-41	-9.466e+01	0.0000	5179.0	2.61%	4215.0	2.16%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-39	-9.150e+01	0.0000	9735.0	4.91%	8388.1	4.30%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-39	-9.069e+01	0.0000	2898.0	1.46%	2215.8	1.13%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-37	-8.595e+01	0.0000	5116.0	2.58%	4199.6	2.15%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-34	-8.003e+01	0.0000	5589.0	2.82%	4656.5	2.38%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-34	-7.984e+01	0.0000	12978.0	6.55%	11492.1	5.88%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-34	-7.851e+01	0.0000	3839.0	1.94%	3089.2	1.58%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-33	-7.743e+01	0.0000	34190.0	17.26%	31711.2	16.24%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-31	-7.351e+01	0.0000	9728.0	4.91%	8506.2	4.36%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-28	-6.466e+01	0.0000	1617.0	0.82%	1195.3	0.61%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-24	-5.738e+01	0.0000	1505.0	0.76%	1121.7	0.57%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-24	-5.715e+01	0.0000	16936.0	8.55%	15447.2	7.91%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-24	-5.586e+01	0.0000	7192.0	3.63%	6278.6	3.22%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-23	-5.452e+01	0.0000	4554.0	2.30%	3854.0	1.97%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-23	-5.442e+01	0.0000	3015.0	1.52%	2460.9	1.26%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-22	-5.285e+01	0.0000	4250.0	2.14%	3586.5	1.84%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-22	-5.219e+01	0.0000	1683.0	0.85%	1291.9	0.66%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-21	-4.961e+01	0.0000	4131.0	2.08%	3496.8	1.79%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-20	-4.622e+01	0.0000	10324.0	5.21%	9295.0	4.76%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-19	-4.591e+01	0.0000	19572.0	9.88%	18101.3	9.27%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-19	-4.523e+01	0.0000	20419.0	10.31%	18922.6	9.69%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-19	-4.466e+01	0.0000	14591.0	7.36%	13359.2	6.84%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-19	-4.449e+01	0.0000	8992.0	4.54%	8056.2	4.13%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-18	-4.309e+01	0.0000	7838.0	3.96%	6984.6	3.58%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-17	-4.143e+01	0.0000	2685.0	1.36%	2226.4	1.14%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-17	-4.132e+01	0.0000	713.0	0.36%	497.3	0.25%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-17	-4.099e+01	0.0000	9175.0	4.63%	8262.6	4.23%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-17	-4.072e+01	0.0000	8940.0	4.51%	8043.7	4.12%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-17	-4.000e+01	0.0000	23389.0	11.80%	21853.9	11.19%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-17	-3.983e+01	0.0000	7998.0	4.04%	7164.8	3.67%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-17	-3.957e+01	0.0000	4824.0	2.43%	4199.5	2.15%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-16	-3.881e+01	0.0000	34240.0	17.28%	32359.0	16.57%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-16	-3.775e+01	0.0000	44660.0	22.54%	42500.8	21.76%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-16	-3.702e+01	0.0000	4764.0	2.40%	4162.6	2.13%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-15	-3.610e+01	0.0000	21108.0	10.65%	19719.6	10.10%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-14	-3.394e+01	0.0000	2434.0	1.23%	2038.5	1.04%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-14	-3.384e+01	0.0000	13228.0	6.68%	12194.8	6.24%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-14	-3.259e+01	0.0000	8190.0	4.13%	7417.5	3.80%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-14	-3.234e+01	0.0000	16262.0	8.21%	15120.1	7.74%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-14	-3.227e+01	0.0000	19904.0	10.05%	18622.8	9.54%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-13	-3.016e+01	0.0000	2965.0	1.50%	2546.9	1.30%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-12	-2.969e+01	0.0000	4839.0	2.44%	4290.5	2.20%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-12	-2.933e+01	0.0000	1562.0	0.79%	1274.7	0.65%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-12	-2.830e+01	0.0000	47590.0	24.02%	45575.3	23.34%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-12	-2.799e+01	0.0000	302.0	0.15%	192.5	0.10%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-11	-2.685e+01	0.0000	12743.0	6.43%	11827.5	6.06%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-11	-2.587e+01	0.0000	32042.0	16.17%	30493.6	15.62%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-10	-2.493e+01	0.0000	10997.0	5.55%	10183.9	5.21%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-10	-2.340e+01	0.0000	3547.0	1.79%	3135.5	1.61%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-10	-2.325e+01	0.0000	19406.0	9.79%	18302.6	9.37%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-10	-2.323e+01	0.0000	1596.0	0.81%	1335.0	0.68%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-9	-2.292e+01	0.0000	14010.0	7.07%	13105.7	6.71%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-9	-2.289e+01	0.0000	1519.0	0.77%	1267.7	0.65%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-9	-2.181e+01	0.0000	222.0	0.11%	140.1	0.07%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-9	-2.159e+01	0.0000	6673.0	3.37%	6102.5	3.12%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-9	-2.157e+01	0.0000	20215.0	10.20%	19118.5	9.79%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-9	-2.115e+01	0.0000	1907.0	0.96%	1631.7	0.84%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-9	-2.074e+01	0.0000	14136.0	7.13%	13264.1	6.79%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-6	-1.581e+01	0.0000	936.0	0.47%	776.5	0.40%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-6	-1.567e+01	0.0000	3822.0	1.93%	3466.6	1.78%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-6	-1.547e+01	0.0000	25451.0	12.84%	24344.9	12.47%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-6	-1.462e+01	0.0000	8302.0	4.19%	7757.5	3.97%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-6	-1.444e+01	0.0000	7209.0	3.64%	6711.9	3.44%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-5	-1.381e+01	0.0000	9166.0	4.63%	8602.4	4.41%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-5	-1.313e+01	0.0000	4774.0	2.41%	4401.0	2.25%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-5	-1.309e+01	0.0000	7103.0	3.58%	6631.7	3.40%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-5	-1.291e+01	0.0000	10883.0	5.49%	10275.8	5.26%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-5	-1.264e+01	0.0000	38081.0	19.22%	36756.0	18.82%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-5	-1.229e+01	0.0000	812.0	0.41%	682.4	0.35%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-4	-1.147e+01	0.0000	8667.0	4.37%	8165.1	4.18%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-4	-1.137e+01	0.0000	568.0	0.29%	466.8	0.24%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-4	-1.131e+01	0.0000	21958.0	11.08%	21064.2	10.79%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-4	-1.039e+01	0.0000	10405.0	5.25%	9867.7	5.05%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-4	-1.035e+01	0.0001	1942.0	0.98%	1746.8	0.89%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-4	-9.996e+00	0.0001	5473.0	2.76%	5117.1	2.62%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-4	-9.521e+00	0.0001	802.0	0.40%	689.2	0.35%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-4	-9.422e+00	0.0001	14258.0	7.20%	13628.2	6.98%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-3	-9.103e+00	0.0002	60.0	0.03%	35.7	0.02%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-3	-7.966e+00	0.0005	293.0	0.15%	235.8	0.12%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-3	-7.924e+00	0.0006	6212.0	3.14%	5867.7	3.00%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-3	-7.379e+00	0.0010	18876.0	9.53%	18190.0	9.31%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-6.425e+00	0.0025	2119.0	1.07%	1958.2	1.00%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-2	-6.352e+00	0.0027	9969.0	5.03%	9547.5	4.89%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-6.032e+00	0.0036	8484.0	4.28%	8113.3	4.15%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-2	-6.004e+00	0.0037	239.0	0.12%	195.9	0.10%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-5.739e+00	0.0049	582.0	0.29%	511.0	0.26%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e-2	-5.408e+00	0.0067	3202.0	1.62%	3013.6	1.54%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-2	-5.403e+00	0.0067	2421.0	1.22%	2262.3	1.16%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-5.230e+00	0.0080	1292.0	0.65%	1185.3	0.61%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-2	-5.215e+00	0.0081	5817.0	2.94%	5546.5	2.84%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-2	-4.766e+00	0.0126	4169.0	2.10%	3960.9	2.03%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-4.440e+00	0.0174	11575.0	5.84%	11176.0	5.72%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-4.179e+00	0.0225	1654.0	0.83%	1545.1	0.79%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-4.178e+00	0.0225	6846.0	3.46%	6575.8	3.37%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-3.982e+00	0.0272	110.0	0.06%	88.5	0.05%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.612e+00	0.0392	1550.0	0.78%	1454.4	0.74%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.612e+00	0.0392	1550.0	0.78%	1454.4	0.74%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-3.072e+00	0.0670	9082.0	4.58%	8797.5	4.51%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-2.873e+00	0.0814	869.0	0.44%	811.9	0.42%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-1	-2.729e+00	0.0938	4090.0	2.06%	3937.6	2.02%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-2.712e+00	0.0950	102.0	0.05%	86.3	0.04%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.435e+00	0.1250	417.0	0.21%	384.6	0.20%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.371e+00	0.1327	1642.0	0.83%	1567.0	0.80%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.179e+00	0.1604	7236.0	3.65%	7032.8	3.60%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-2.041e+00	0.1836	85798.0	43.30%	84313.0	43.17%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.968e+00	0.1967	3802.0	1.92%	3682.1	1.89%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.663e+00	0.2659	2575.0	1.30%	2494.2	1.28%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.549e+00	0.2972	2667.0	1.35%	2588.6	1.33%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.541e+00	0.2985	19889.0	10.04%	19497.4	9.98%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.342e+00	0.3631	1492.0	0.75%	1446.0	0.74%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.316e+00	0.3716	181.0	0.09%	170.9	0.09%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-1.303e+00	0.3752	15876.0	8.01%	15574.1	7.98%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.168e+00	0.4278	2524.0	1.27%	2463.4	1.26%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.169e-01	0.7403	947.0	0.48%	936.2	0.48%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.914e-01	0.7569	8123.0	4.10%	8017.1	4.11%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.842e-01	0.7599	2087.0	1.05%	2064.0	1.06%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.356e-01	0.7953	12355.0	6.24%	12199.8	6.25%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.638e-01	0.8518	4761.0	2.40%	4715.0	2.41%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.444e-01	0.8657	4695.0	2.37%	4651.6	2.38%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-4.372e-01	0.8692	454.0	0.23%	455.9	0.23%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.986e-01	0.9006	873.0	0.44%	873.9	0.45%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-3.868e-01	0.9085	13430.0	6.78%	13287.0	6.80%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.781e-01	1.0000	1015.0	0.51%	1022.8	0.52%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.727e-01	1.0000	3536.0	1.78%	3526.2	1.81%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.717e-01	1.0000	3407.0	1.72%	3415.2	1.75%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.273e-01	1.0000	11361.0	5.73%	11317.6	5.80%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-8.167e-02	1.0000	1687.0	0.85%	1720.3	0.88%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-2.383e-02	1.0000	5751.0	2.90%	5815.1	2.98%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-2.034e-02	1.0000	3526.0	1.78%	3595.8	1.84%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.473e-02	1.0000	2528.0	1.28%	2600.3	1.33%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.221e-02	1.0000	4985.0	2.52%	5069.5	2.60%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-5.785e-03	1.0000	3180.0	1.60%	3275.6	1.68%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-4.467e-03	1.0000	3302.0	1.67%	3403.8	1.74%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.968e-03	1.0000	5606.0	2.83%	5720.5	2.93%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.543e-03	1.0000	3121.0	1.58%	3225.4	1.65%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-8.550e-04	1.0000	203.0	0.10%	247.1	0.13%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.230e-04	1.0000	4133.0	2.09%	4307.3	2.21%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.500e-05	1.0000	5344.0	2.70%	5543.0	2.84%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-4.600e-05	1.0000	353.0	0.18%	425.2	0.22%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.900e-05	1.0000	2498.0	1.26%	2660.5	1.36%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.200e-05	1.0000	3680.0	1.86%	3874.1	1.98%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.100e-05	1.0000	8695.0	4.39%	8956.2	4.59%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.000e-06	1.0000	3755.0	1.90%	3963.9	2.03%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-6.000e-06	1.0000	2293.0	1.16%	2472.7	1.27%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.000e-06	1.0000	312.0	0.16%	391.0	0.20%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.000e-06	1.0000	12987.0	6.55%	13298.1	6.81%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.000e-06	1.0000	1846.0	0.93%	2025.9	1.04%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.000e-06	1.0000	401.0	0.20%	496.8	0.25%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	1038.0	0.52%	1186.9	0.61%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-0.000e+00	1.0000	753.0	0.38%	888.9	0.46%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	1419.0	0.72%	1611.5	0.83%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-0.000e+00	1.0000	905.0	0.46%	1066.0	0.55%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	58.0	0.03%	111.0	0.06%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-0.000e+00	1.0000	4191.0	2.12%	4508.3	2.31%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-0.000e+00	1.0000	5931.0	2.99%	6301.4	3.23%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-0.000e+00	1.0000	9311.0	4.70%	9753.2	4.99%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-0.000e+00	1.0000	4295.0	2.17%	4638.1	2.38%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-0.000e+00	1.0000	6458.0	3.26%	6857.7	3.51%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	7669.0	3.87%	8095.6	4.15%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-0.000e+00	1.0000	11852.0	5.98%	12378.9	6.34%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	1618.0	0.82%	1874.0	0.96%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-0.000e+00	1.0000	65380.0	33.00%	65827.5	33.71%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-0.000e+00	1.0000	828.0	0.42%	1022.6	0.52%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	18346.0	9.26%	19061.1	9.76%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	464.0	0.23%	640.8	0.33%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	2136.0	1.08%	2480.2	1.27%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-0.000e+00	1.0000	818.0	0.41%	1051.9	0.54%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	710.0	0.36%	984.9	0.50%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	0.000e+00	1.0000	25883.0	13.06%	30499.4	15.62%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	49385.0	24.92%	58962.5	30.19%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	0.000e+00	1.0000	21103.0	10.65%	22038.1	11.29%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	32819.0	16.56%	35018.1	17.93%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	0.000e+00	1.0000	38893.0	19.63%	40461.7	20.72%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	44206.0	22.31%	51562.2	26.40%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	6820.0	3.44%	8270.2	4.23%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	0.000e+00	1.0000	4086.0	2.06%	5612.2	2.87%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	33906.0	17.11%	41479.5	21.24%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	27313.0	13.78%	40560.8	20.77%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	0.000e+00	1.0000	38881.0	19.62%	39813.8	20.39%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	48630.0	24.54%	49692.0	25.45%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	4686.0	2.36%	8683.3	4.45%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	719.0	0.36%	1029.8	0.53%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	14556.0	7.35%	22362.7	11.45%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	8700.0	4.39%	13994.5	7.17%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	7037.0	3.55%	12146.6	6.22%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	4045.0	2.04%	7778.6	3.98%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	14254.0	7.19%	17155.6	8.79%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	42773.0	21.59%	48744.8	24.96%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	23247.0	11.73%	33746.4	17.28%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	44761.0	22.59%	50947.0	26.09%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	5695.0	2.87%	7004.2	3.59%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	0.000e+00	1.0000	33112.0	16.71%	35488.1	18.17%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	28082.0	14.17%	36060.5	18.47%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	2201.0	1.11%	4620.4	2.37%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	9225.0	4.66%	12588.5	6.45%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	16186.0	8.17%	18479.4	9.46%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	9719.0	4.90%	13398.4	6.86%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	60595.0	30.58%	65706.4	33.65%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	42430.0	21.41%	49318.3	25.25%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	46833.0	23.64%	51558.1	26.40%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	49862.0	25.16%	52292.7	26.78%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	22586.0	11.40%	23545.5	12.06%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	30230.0	15.26%	33241.6	17.02%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	0.000e+00	1.0000	1341.0	0.68%	1686.7	0.86%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	489.0	0.25%	1283.5	0.66%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	83005.0	41.89%	85714.1	43.89%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	61091.0	30.83%	65910.5	33.75%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	57895.0	29.22%	67654.5	34.64%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	0.000e+00	1.0000	4718.0	2.38%	6962.5	3.57%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	9661.0	4.88%	16707.6	8.56%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	23309.0	11.76%	26517.8	13.58%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	12869.0	6.49%	18382.5	9.41%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	7722.0	3.90%	10900.0	5.58%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	9908.0	5.00%	13208.3	6.76%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	23243.0	11.73%	27985.6	14.33%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	10915.0	5.51%	13168.0	6.74%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	20196.0	10.19%	24886.3	12.74%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	5217.0	2.63%	5989.5	3.07%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	3364.0	1.70%	4691.9	2.40%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	18543.0	9.36%	20537.1	10.52%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	74852.0	37.78%	77145.7	39.50%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	0.000e+00	1.0000	20991.0	10.59%	22940.0	11.75%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	0.000e+00	1.0000	16249.0	8.20%	17505.9	8.96%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	11510.0	5.81%	14026.5	7.18%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	21673.0	10.94%	30280.1	15.51%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	30013.0	15.15%	45366.2	23.23%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	16930.0	8.54%	27561.6	14.11%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	0.000e+00	1.0000	361.0	0.18%	594.6	0.30%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	1381.0	0.70%	2025.4	1.04%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	37060.0	18.70%	38400.6	19.66%