Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 193648)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 191186)	% of Background Sequences with Motif
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-23013	-5.299e+04	0.0000	56216.0	29.03%	10782.9	5.64%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-22819	-5.255e+04	0.0000	50865.0	26.27%	8659.9	4.53%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-21982	-5.062e+04	0.0000	54568.0	28.18%	10606.3	5.54%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-21439	-4.937e+04	0.0000	58167.0	30.04%	12531.4	6.55%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-21251	-4.893e+04	0.0000	49917.0	25.78%	9011.7	4.71%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-20884	-4.809e+04	0.0000	45907.0	23.71%	7587.0	3.97%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-16880	-3.887e+04	0.0000	35174.0	18.16%	5293.8	2.77%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-14005	-3.225e+04	0.0000	27767.0	14.34%	3846.9	2.01%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-6842	-1.576e+04	0.0000	17438.0	9.00%	3188.7	1.67%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-5267	-1.213e+04	0.0000	11240.0	5.80%	1646.7	0.86%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-3461	-7.970e+03	0.0000	12723.0	6.57%	3266.0	1.71%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2233	-5.144e+03	0.0000	5356.0	2.77%	891.2	0.47%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2202	-5.070e+03	0.0000	4857.0	2.51%	731.7	0.38%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1847	-4.255e+03	0.0000	4434.0	2.29%	737.5	0.39%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-1756	-4.044e+03	0.0000	3983.0	2.06%	619.1	0.32%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1731	-3.987e+03	0.0000	11102.0	5.73%	4169.4	2.18%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1364	-3.143e+03	0.0000	23928.0	12.36%	13879.5	7.26%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1228	-2.828e+03	0.0000	7392.0	3.82%	2660.1	1.39%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1119	-2.578e+03	0.0000	42764.0	22.08%	30311.1	15.85%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-1112	-2.563e+03	0.0000	47372.0	24.46%	34355.2	17.96%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-1001	-2.306e+03	0.0000	26352.0	13.61%	17042.6	8.91%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-919	-2.118e+03	0.0000	29864.0	15.42%	20281.8	10.60%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-896	-2.064e+03	0.0000	28550.0	14.74%	19289.8	10.08%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-870	-2.003e+03	0.0000	15747.0	8.13%	9134.7	4.78%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-859	-1.978e+03	0.0000	13165.0	6.80%	7232.0	3.78%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-849	-1.956e+03	0.0000	20117.0	10.39%	12606.2	6.59%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-848	-1.953e+03	0.0000	22457.0	11.60%	14488.5	7.57%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-828	-1.909e+03	0.0000	35831.0	18.50%	25797.1	13.49%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-783	-1.803e+03	0.0000	25711.0	13.28%	17434.3	9.11%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-777	-1.790e+03	0.0000	18842.0	9.73%	11860.2	6.20%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-716	-1.651e+03	0.0000	32301.0	16.68%	23351.2	12.21%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-688	-1.586e+03	0.0000	29711.0	15.34%	21276.5	11.12%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-687	-1.584e+03	0.0000	23950.0	12.37%	16407.1	8.58%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-685	-1.577e+03	0.0000	20972.0	10.83%	13955.1	7.30%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-639	-1.473e+03	0.0000	21205.0	10.95%	14350.2	7.50%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-629	-1.450e+03	0.0000	19091.0	9.86%	12656.6	6.62%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-619	-1.427e+03	0.0000	18351.0	9.48%	12095.0	6.32%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-614	-1.414e+03	0.0000	15935.0	8.23%	10168.1	5.32%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-612	-1.411e+03	0.0000	11464.0	5.92%	6683.7	3.49%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-611	-1.408e+03	0.0000	8353.0	4.31%	4389.4	2.29%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-593	-1.367e+03	0.0000	18245.0	9.42%	12121.0	6.34%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-587	-1.352e+03	0.0000	18631.0	9.62%	12466.4	6.52%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-586	-1.349e+03	0.0000	11267.0	5.82%	6619.8	3.46%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-578	-1.333e+03	0.0000	14648.0	7.56%	9280.9	4.85%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-559	-1.287e+03	0.0000	9106.0	4.70%	5078.3	2.65%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-558	-1.287e+03	0.0000	24544.0	12.67%	17559.1	9.18%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-553	-1.274e+03	0.0000	20849.0	10.77%	14464.4	7.56%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-550	-1.266e+03	0.0000	2789.0	1.44%	895.4	0.47%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-545	-1.257e+03	0.0000	12440.0	6.42%	7662.2	4.01%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-544	-1.255e+03	0.0000	100737.0	52.02%	88647.7	46.34%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-542	-1.250e+03	0.0000	25816.0	13.33%	18737.4	9.80%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-533	-1.229e+03	0.0000	7035.0	3.63%	3644.4	1.91%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-528	-1.216e+03	0.0000	7563.0	3.91%	4036.1	2.11%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-524	-1.207e+03	0.0000	24522.0	12.66%	17732.2	9.27%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-505	-1.163e+03	0.0000	74532.0	38.49%	63642.5	33.27%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-497	-1.145e+03	0.0000	30610.0	15.81%	23188.1	12.12%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-497	-1.144e+03	0.0000	16359.0	8.45%	11009.0	5.76%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-486	-1.119e+03	0.0000	20331.0	10.50%	14373.3	7.51%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-467	-1.077e+03	0.0000	21288.0	10.99%	15285.3	7.99%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-461	-1.063e+03	0.0000	3392.0	1.75%	1358.0	0.71%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-454	-1.047e+03	0.0000	18151.0	9.37%	12701.7	6.64%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-452	-1.041e+03	0.0000	38078.0	19.66%	30173.6	15.77%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-405	-9.344e+02	0.0000	41233.0	21.29%	33419.8	17.47%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-395	-9.113e+02	0.0000	2089.0	1.08%	688.1	0.36%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-393	-9.062e+02	0.0000	14795.0	7.64%	10210.2	5.34%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-376	-8.673e+02	0.0000	13641.0	7.04%	9337.4	4.88%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-376	-8.668e+02	0.0000	12032.0	6.21%	8018.5	4.19%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-369	-8.497e+02	0.0000	20339.0	10.50%	15052.8	7.87%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-365	-8.421e+02	0.0000	7651.0	3.95%	4586.4	2.40%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-363	-8.359e+02	0.0000	16047.0	8.29%	11419.1	5.97%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-354	-8.172e+02	0.0000	12988.0	6.71%	8904.2	4.66%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-353	-8.142e+02	0.0000	13945.0	7.20%	9705.6	5.07%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-350	-8.067e+02	0.0000	16753.0	8.65%	12089.4	6.32%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-347	-7.991e+02	0.0000	41259.0	21.31%	33969.9	17.76%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-334	-7.693e+02	0.0000	18087.0	9.34%	13328.2	6.97%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-323	-7.439e+02	0.0000	15762.0	8.14%	11404.5	5.96%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-316	-7.287e+02	0.0000	27757.0	14.33%	21965.3	11.48%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-313	-7.218e+02	0.0000	15666.0	8.09%	11379.0	5.95%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-313	-7.209e+02	0.0000	20229.0	10.45%	15323.5	8.01%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-306	-7.066e+02	0.0000	28851.0	14.90%	23027.4	12.04%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-304	-7.007e+02	0.0000	11800.0	6.09%	8174.0	4.27%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-302	-6.964e+02	0.0000	20126.0	10.39%	15307.5	8.00%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-301	-6.941e+02	0.0000	48607.0	25.10%	41248.2	21.56%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-297	-6.852e+02	0.0000	16058.0	8.29%	11811.6	6.17%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-282	-6.496e+02	0.0000	30182.0	15.59%	24447.0	12.78%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-269	-6.198e+02	0.0000	12668.0	6.54%	9091.5	4.75%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-264	-6.101e+02	0.0000	12638.0	6.53%	9090.3	4.75%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-260	-5.991e+02	0.0000	16773.0	8.66%	12674.1	6.63%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-258	-5.955e+02	0.0000	8422.0	4.35%	5619.5	2.94%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-256	-5.905e+02	0.0000	13092.0	6.76%	9526.7	4.98%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-250	-5.775e+02	0.0000	31287.0	16.16%	25747.9	13.46%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-244	-5.630e+02	0.0000	66623.0	34.40%	59028.3	30.86%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-241	-5.571e+02	0.0000	84014.0	43.38%	75880.4	39.67%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-232	-5.359e+02	0.0000	19833.0	10.24%	15572.7	8.14%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-226	-5.206e+02	0.0000	23123.0	11.94%	18571.6	9.71%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-218	-5.034e+02	0.0000	17102.0	8.83%	13266.7	6.94%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-217	-4.997e+02	0.0000	46124.0	23.82%	39907.7	20.86%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-213	-4.916e+02	0.0000	36458.0	18.83%	30911.3	16.16%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-205	-4.743e+02	0.0000	21217.0	10.96%	17037.6	8.91%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-202	-4.653e+02	0.0000	27065.0	13.98%	22378.7	11.70%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-199	-4.594e+02	0.0000	8159.0	4.21%	5695.0	2.98%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-197	-4.537e+02	0.0000	47335.0	24.44%	41311.9	21.60%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-195	-4.511e+02	0.0000	4398.0	2.27%	2680.6	1.40%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-188	-4.336e+02	0.0000	24370.0	12.58%	20060.6	10.49%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-187	-4.326e+02	0.0000	6328.0	3.27%	4246.1	2.22%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-183	-4.226e+02	0.0000	19330.0	9.98%	15545.8	8.13%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-176	-4.057e+02	0.0000	23125.0	11.94%	19050.2	9.96%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-176	-4.053e+02	0.0000	30089.0	15.54%	25445.7	13.30%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-171	-3.951e+02	0.0000	15434.0	7.97%	12169.3	6.36%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-168	-3.885e+02	0.0000	31478.0	16.25%	26819.5	14.02%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-166	-3.834e+02	0.0000	19177.0	9.90%	15567.6	8.14%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-161	-3.726e+02	0.0000	46002.0	23.75%	40548.6	21.20%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-160	-3.693e+02	0.0000	5338.0	2.76%	3571.9	1.87%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-160	-3.693e+02	0.0000	21147.0	10.92%	17413.9	9.10%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-158	-3.659e+02	0.0000	9270.0	4.79%	6873.6	3.59%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-156	-3.600e+02	0.0000	21961.0	11.34%	18197.9	9.51%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-154	-3.550e+02	0.0000	33205.0	17.15%	28612.9	14.96%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-154	-3.550e+02	0.0000	52784.0	27.26%	47119.1	24.63%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-153	-3.536e+02	0.0000	15251.0	7.88%	12162.3	6.36%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-150	-3.476e+02	0.0000	25249.0	13.04%	21272.1	11.12%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-149	-3.431e+02	0.0000	4448.0	2.30%	2905.7	1.52%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-146	-3.379e+02	0.0000	6995.0	3.61%	5014.1	2.62%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-146	-3.376e+02	0.0000	3168.0	1.64%	1910.2	1.00%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-146	-3.376e+02	0.0000	3168.0	1.64%	1910.2	1.00%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-145	-3.349e+02	0.0000	42878.0	22.14%	37835.2	19.78%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-143	-3.312e+02	0.0000	29773.0	15.37%	25549.4	13.36%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-143	-3.301e+02	0.0000	10213.0	5.27%	7797.6	4.08%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-140	-3.242e+02	0.0000	32127.0	16.59%	27785.1	14.53%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-140	-3.228e+02	0.0000	15686.0	8.10%	12675.8	6.63%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-139	-3.210e+02	0.0000	61528.0	31.77%	55759.7	29.15%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-138	-3.193e+02	0.0000	5188.0	2.68%	3554.6	1.86%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-134	-3.090e+02	0.0000	18514.0	9.56%	15293.1	8.00%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-132	-3.045e+02	0.0000	33945.0	17.53%	29608.4	15.48%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-127	-2.929e+02	0.0000	15649.0	8.08%	12769.2	6.68%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-125	-2.891e+02	0.0000	2219.0	1.15%	1263.7	0.66%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-124	-2.867e+02	0.0000	1992.0	1.03%	1099.1	0.57%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-124	-2.862e+02	0.0000	28185.0	14.55%	24331.8	12.72%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-123	-2.850e+02	0.0000	23519.0	12.14%	20006.0	10.46%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-123	-2.848e+02	0.0000	20038.0	10.35%	16803.0	8.78%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-121	-2.798e+02	0.0000	15290.0	7.90%	12502.4	6.54%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-120	-2.776e+02	0.0000	3282.0	1.69%	2098.7	1.10%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-118	-2.730e+02	0.0000	4566.0	2.36%	3145.5	1.64%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-115	-2.665e+02	0.0000	12444.0	6.43%	10000.0	5.23%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-115	-2.654e+02	0.0000	18835.0	9.73%	15798.6	8.26%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-113	-2.624e+02	0.0000	3202.0	1.65%	2062.4	1.08%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-113	-2.617e+02	0.0000	34026.0	17.57%	29965.5	15.67%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-112	-2.594e+02	0.0000	2199.0	1.14%	1289.3	0.67%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-112	-2.583e+02	0.0000	4441.0	2.29%	3076.0	1.61%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-110	-2.553e+02	0.0000	11319.0	5.84%	9039.0	4.73%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-108	-2.489e+02	0.0000	2566.0	1.33%	1586.3	0.83%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-106	-2.462e+02	0.0000	50751.0	26.21%	46000.6	24.05%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-103	-2.389e+02	0.0000	10348.0	5.34%	8239.5	4.31%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-103	-2.386e+02	0.0000	14068.0	7.26%	11583.8	6.06%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-100	-2.311e+02	0.0000	6558.0	3.39%	4939.1	2.58%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-98	-2.279e+02	0.0000	28242.0	14.58%	24754.1	12.94%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-98	-2.276e+02	0.0000	4035.0	2.08%	2810.9	1.47%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-98	-2.269e+02	0.0000	31110.0	16.06%	27459.5	14.36%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-98	-2.268e+02	0.0000	14216.0	7.34%	11773.7	6.16%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-97	-2.236e+02	0.0000	2556.0	1.32%	1621.4	0.85%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-97	-2.234e+02	0.0000	24648.0	12.73%	21419.3	11.20%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-96	-2.233e+02	0.0000	2784.0	1.44%	1802.7	0.94%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-94	-2.179e+02	0.0000	9097.0	4.70%	7209.4	3.77%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-90	-2.085e+02	0.0000	3495.0	1.80%	2408.7	1.26%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-88	-2.032e+02	0.0000	9946.0	5.14%	8025.3	4.20%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-87	-2.026e+02	0.0000	11901.0	6.15%	9788.5	5.12%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-85	-1.968e+02	0.0000	14938.0	7.71%	12584.4	6.58%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-84	-1.956e+02	0.0000	2513.0	1.30%	1638.2	0.86%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-84	-1.938e+02	0.0000	11159.0	5.76%	9158.5	4.79%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-84	-1.936e+02	0.0000	38016.0	19.63%	34264.5	17.91%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-81	-1.870e+02	0.0000	6856.0	3.54%	5345.4	2.79%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-80	-1.843e+02	0.0000	15823.0	8.17%	13466.2	7.04%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-79	-1.842e+02	0.0000	77960.0	40.26%	72981.7	38.15%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-79	-1.830e+02	0.0000	39477.0	20.39%	35749.5	18.69%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-77	-1.796e+02	0.0000	42382.0	21.89%	38559.8	20.16%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-73	-1.685e+02	0.0000	6561.0	3.39%	5153.2	2.69%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-70	-1.625e+02	0.0000	24875.0	12.85%	22057.3	11.53%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-68	-1.572e+02	0.0000	4257.0	2.20%	3183.2	1.66%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-67	-1.562e+02	0.0000	3137.0	1.62%	2235.4	1.17%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-63	-1.471e+02	0.0000	11355.0	5.86%	9569.5	5.00%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-62	-1.439e+02	0.0000	7401.0	3.82%	5999.1	3.14%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-62	-1.437e+02	0.0000	3965.0	2.05%	2973.7	1.55%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-61	-1.414e+02	0.0000	18406.0	9.50%	16138.5	8.44%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-59	-1.372e+02	0.0000	1515.0	0.78%	954.8	0.50%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-58	-1.352e+02	0.0000	20483.0	10.58%	18132.0	9.48%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-52	-1.212e+02	0.0000	5486.0	2.83%	4385.3	2.29%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-52	-1.198e+02	0.0000	387.0	0.20%	157.2	0.08%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-51	-1.191e+02	0.0000	4111.0	2.12%	3180.9	1.66%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-49	-1.143e+02	0.0000	5379.0	2.78%	4318.5	2.26%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-48	-1.119e+02	0.0000	4890.0	2.53%	3893.7	2.04%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-47	-1.104e+02	0.0000	14582.0	7.53%	12786.3	6.68%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-47	-1.095e+02	0.0000	11214.0	5.79%	9660.7	5.05%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-47	-1.093e+02	0.0000	10861.0	5.61%	9335.1	4.88%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-45	-1.059e+02	0.0000	498.0	0.26%	240.7	0.13%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-45	-1.055e+02	0.0000	5822.0	3.01%	4753.3	2.48%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-45	-1.042e+02	0.0000	5900.0	3.05%	4829.2	2.52%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-45	-1.042e+02	0.0000	4640.0	2.40%	3702.1	1.94%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-43	-1.007e+02	0.0000	3229.0	1.67%	2474.2	1.29%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-43	-9.946e+01	0.0000	5711.0	2.95%	4681.3	2.45%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-43	-9.913e+01	0.0000	30883.0	15.95%	28347.3	14.82%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-42	-9.805e+01	0.0000	17426.0	9.00%	15553.0	8.13%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-39	-9.113e+01	0.0000	4727.0	2.44%	3835.8	2.01%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-37	-8.581e+01	0.0000	2386.0	1.23%	1793.9	0.94%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-36	-8.498e+01	0.0000	15443.0	7.97%	13795.4	7.21%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-35	-8.250e+01	0.0000	2612.0	1.35%	1999.5	1.05%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-34	-7.903e+01	0.0000	25281.0	13.05%	23208.0	12.13%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-34	-7.883e+01	0.0000	2733.0	1.41%	2117.7	1.11%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-32	-7.512e+01	0.0000	32513.0	16.79%	30200.9	15.79%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-30	-6.916e+01	0.0000	37054.0	19.13%	34665.2	18.12%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-30	-6.910e+01	0.0000	9434.0	4.87%	8284.3	4.33%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-28	-6.647e+01	0.0000	1647.0	0.85%	1218.5	0.64%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-28	-6.562e+01	0.0000	6882.0	3.55%	5937.0	3.10%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-27	-6.339e+01	0.0000	8240.0	4.26%	7213.4	3.77%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-27	-6.339e+01	0.0000	12254.0	6.33%	10978.1	5.74%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-27	-6.314e+01	0.0000	12436.0	6.42%	11152.4	5.83%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-26	-5.988e+01	0.0000	18738.0	9.68%	17171.2	8.98%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-25	-5.804e+01	0.0000	20953.0	10.82%	19311.2	10.10%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-23	-5.513e+01	0.0000	10424.0	5.38%	9327.4	4.88%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-23	-5.473e+01	0.0000	10418.0	5.38%	9325.2	4.88%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-21	-5.011e+01	0.0000	8452.0	4.36%	7516.5	3.93%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-20	-4.752e+01	0.0000	9052.0	4.67%	8103.5	4.24%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-20	-4.717e+01	0.0000	1576.0	0.81%	1218.6	0.64%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-19	-4.599e+01	0.0000	35969.0	18.57%	33981.2	17.77%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-19	-4.597e+01	0.0000	15994.0	8.26%	14714.8	7.69%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-18	-4.356e+01	0.0000	10624.0	5.49%	9627.6	5.03%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-18	-4.177e+01	0.0000	1857.0	0.96%	1486.7	0.78%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-18	-4.152e+01	0.0000	32538.0	16.80%	30731.4	16.07%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-17	-4.134e+01	0.0000	338.0	0.17%	199.1	0.10%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-17	-4.108e+01	0.0000	5086.0	2.63%	4441.9	2.32%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-17	-4.067e+01	0.0000	8571.0	4.43%	7713.1	4.03%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-16	-3.817e+01	0.0000	19338.0	9.99%	18027.3	9.42%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-15	-3.570e+01	0.0000	4294.0	2.22%	3744.1	1.96%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-15	-3.503e+01	0.0000	668.0	0.34%	476.7	0.25%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-15	-3.457e+01	0.0000	8346.0	4.31%	7561.3	3.95%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-14	-3.354e+01	0.0000	19927.0	10.29%	18666.6	9.76%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-14	-3.303e+01	0.0000	1001.0	0.52%	766.8	0.40%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-14	-3.255e+01	0.0000	22157.0	11.44%	20836.1	10.89%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-13	-3.222e+01	0.0000	1414.0	0.73%	1132.9	0.59%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-13	-3.211e+01	0.0000	18693.0	9.65%	17499.5	9.15%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-13	-3.087e+01	0.0000	7140.0	3.69%	6457.8	3.38%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-12	-2.930e+01	0.0000	12470.0	6.44%	11557.3	6.04%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-12	-2.848e+01	0.0000	1723.0	0.89%	1426.3	0.75%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-11	-2.633e+01	0.0000	44000.0	22.72%	42221.4	22.07%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-11	-2.615e+01	0.0000	2949.0	1.52%	2564.5	1.34%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-11	-2.571e+01	0.0000	10543.0	5.44%	9761.0	5.10%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-10	-2.386e+01	0.0000	1581.0	0.82%	1321.4	0.69%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-9	-2.210e+01	0.0000	3467.0	1.79%	3078.7	1.61%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-8	-2.029e+01	0.0000	8222.0	4.25%	7612.2	3.98%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-8	-1.985e+01	0.0000	13493.0	6.97%	12689.0	6.63%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-8	-1.977e+01	0.0000	1450.0	0.75%	1224.8	0.64%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-8	-1.891e+01	0.0000	35550.0	18.36%	34162.4	17.86%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-8	-1.846e+01	0.0000	2521.0	1.30%	2223.7	1.16%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-7	-1.712e+01	0.0000	4423.0	2.28%	4028.7	2.11%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-7	-1.703e+01	0.0000	8303.0	4.29%	7737.5	4.05%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-6	-1.563e+01	0.0000	18974.0	9.80%	18088.2	9.46%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-5	-1.261e+01	0.0000	41737.0	21.55%	40424.5	21.13%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-5	-1.236e+01	0.0000	4758.0	2.46%	4406.4	2.30%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-5	-1.211e+01	0.0000	3568.0	1.84%	3273.3	1.71%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-5	-1.194e+01	0.0000	8556.0	4.42%	8067.7	4.22%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e-5	-1.186e+01	0.0000	59.0	0.03%	31.3	0.02%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-5	-1.185e+01	0.0000	4320.0	2.23%	3994.7	2.09%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-5	-1.179e+01	0.0000	7376.0	3.81%	6931.9	3.62%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-5	-1.171e+01	0.0000	13000.0	6.71%	12377.3	6.47%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-5	-1.163e+01	0.0000	6094.0	3.15%	5699.1	2.98%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-4	-1.143e+01	0.0000	804.0	0.42%	681.9	0.36%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-4	-1.125e+01	0.0000	544.0	0.28%	447.0	0.23%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-4	-1.102e+01	0.0000	18130.0	9.36%	17386.3	9.09%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-4	-1.102e+01	0.0000	761.0	0.39%	644.1	0.34%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-4	-1.073e+01	0.0000	1643.0	0.85%	1465.5	0.77%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e-4	-1.071e+01	0.0000	8836.0	4.56%	8362.6	4.37%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-4	-1.041e+01	0.0000	305.0	0.16%	237.2	0.12%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-4	-9.794e+00	0.0001	6160.0	3.18%	5794.0	3.03%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-4	-9.394e+00	0.0001	216.0	0.11%	163.7	0.09%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-4	-9.376e+00	0.0001	2027.0	1.05%	1840.3	0.96%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-4	-9.358e+00	0.0001	4422.0	2.28%	4128.1	2.16%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-3	-9.197e+00	0.0002	5068.0	2.62%	4752.3	2.48%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-8.800e+00	0.0002	2069.0	1.07%	1886.6	0.99%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-3	-8.756e+00	0.0002	30663.0	15.83%	29719.0	15.54%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e-3	-8.585e+00	0.0003	4433.0	2.29%	4151.4	2.17%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-3	-7.737e+00	0.0007	288.0	0.15%	232.6	0.12%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-3	-7.438e+00	0.0009	2391.0	1.23%	2209.3	1.15%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-3	-7.389e+00	0.0009	1255.0	0.65%	1130.0	0.59%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-6.953e+00	0.0015	6865.0	3.54%	6534.9	3.42%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-2	-6.905e+00	0.0015	15495.0	8.00%	14943.7	7.81%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e-2	-6.704e+00	0.0018	6289.0	3.25%	5981.9	3.13%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-2	-6.513e+00	0.0022	14218.0	7.34%	13710.0	7.17%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-2	-4.639e+00	0.0145	6990.0	3.61%	6716.4	3.51%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-4.353e+00	0.0192	6418.0	3.31%	6167.4	3.22%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-4.124e+00	0.0240	9440.0	4.87%	9125.6	4.77%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-3.785e+00	0.0336	3541.0	1.83%	3382.5	1.77%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-3.542e+00	0.0427	9606.0	4.96%	9310.0	4.87%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-3.408e+00	0.0487	25134.0	12.98%	24558.2	12.84%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.315e+00	0.0533	11008.0	5.68%	10693.3	5.59%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-3.308e+00	0.0535	82831.0	42.77%	81430.7	42.57%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-3.106e+00	0.0652	404.0	0.21%	366.7	0.19%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.007e+00	0.0717	7696.0	3.97%	7462.8	3.90%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-2.906e+00	0.0791	12080.0	6.24%	11764.5	6.15%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.742e+00	0.0929	2735.0	1.41%	2624.9	1.37%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.155e+00	0.1665	9633.0	4.97%	9402.0	4.92%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.900e+00	0.2142	1995.0	1.03%	1925.1	1.01%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.650e+00	0.2741	3326.0	1.72%	3236.4	1.69%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.621e+00	0.2810	815.0	0.42%	781.4	0.41%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.603e+00	0.2852	4439.0	2.29%	4330.3	2.26%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.566e+00	0.2952	530.0	0.27%	505.5	0.26%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.537e+00	0.3028	2326.0	1.20%	2260.8	1.18%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.112e+00	0.4617	1583.0	0.82%	1546.9	0.81%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.087e+00	0.4717	1519.0	0.78%	1484.8	0.78%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.030e+00	0.4961	1462.0	0.75%	1430.4	0.75%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.030e+00	0.4961	1462.0	0.75%	1430.4	0.75%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.150e-01	0.5547	2614.0	1.35%	2569.3	1.34%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-7.184e-01	0.6731	110.0	0.06%	108.5	0.06%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.440e-01	0.7228	856.0	0.44%	847.3	0.44%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-5.085e-01	0.8250	101.0	0.05%	102.2	0.05%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-4.577e-01	0.8652	19053.0	9.84%	18863.1	9.86%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-3.556e-01	0.9552	3542.0	1.83%	3529.2	1.85%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.049e-01	1.0000	3161.0	1.63%	3157.1	1.65%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.928e-01	1.0000	405.0	0.21%	413.4	0.22%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.785e-01	1.0000	10569.0	5.46%	10508.3	5.49%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.561e-01	1.0000	1039.0	0.54%	1050.4	0.55%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-2.373e-01	1.0000	5268.0	2.72%	5260.3	2.75%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.104e-01	1.0000	973.0	0.50%	988.2	0.52%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.653e-01	1.0000	3378.0	1.74%	3395.6	1.78%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.653e-01	1.0000	165.0	0.09%	176.6	0.09%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.120e-01	1.0000	12662.0	6.54%	12641.7	6.61%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.796e-02	1.0000	5094.0	2.63%	5132.6	2.68%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.229e-02	1.0000	2058.0	1.06%	2099.7	1.10%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-4.941e-02	1.0000	21342.0	11.02%	21307.0	11.14%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.360e-02	1.0000	4047.0	2.09%	4122.3	2.16%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.568e-02	1.0000	3490.0	1.80%	3573.4	1.87%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.257e-02	1.0000	2436.0	1.26%	2516.0	1.32%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-8.215e-03	1.0000	8250.0	4.26%	8361.6	4.37%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-3.898e-03	1.0000	1548.0	0.80%	1634.5	0.85%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.432e-03	1.0000	2884.0	1.49%	2993.7	1.57%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-3.415e-03	1.0000	172.0	0.09%	207.1	0.11%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-2.551e-03	1.0000	4721.0	2.44%	4853.6	2.54%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.906e-03	1.0000	3329.0	1.72%	3454.4	1.81%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.030e-03	1.0000	8599.0	4.44%	8772.1	4.59%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.100e-05	1.0000	348.0	0.18%	419.5	0.22%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-5.900e-05	1.0000	6298.0	3.25%	6522.5	3.41%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.000e-05	1.0000	3351.0	1.73%	3542.6	1.85%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.000e-06	1.0000	5366.0	2.77%	5622.1	2.94%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.000e-06	1.0000	759.0	0.39%	877.7	0.46%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.000e-06	1.0000	2358.0	1.22%	2549.8	1.33%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.000e-06	1.0000	3936.0	2.03%	4181.2	2.19%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.000e-06	1.0000	441.0	0.23%	540.7	0.28%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.000e-06	1.0000	1019.0	0.53%	1166.4	0.61%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-0.000e+00	1.0000	317.0	0.16%	407.8	0.21%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	61.0	0.03%	107.8	0.06%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-0.000e+00	1.0000	4142.0	2.14%	4415.4	2.31%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	7424.0	3.83%	7761.9	4.06%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	4965.0	2.56%	5295.8	2.77%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-0.000e+00	1.0000	2482.0	1.28%	2771.2	1.45%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-0.000e+00	1.0000	4413.0	2.28%	4797.6	2.51%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-0.000e+00	1.0000	1415.0	0.73%	1668.0	0.87%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	1393.0	0.72%	1649.5	0.86%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-0.000e+00	1.0000	738.0	0.38%	934.5	0.49%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	1508.0	0.78%	1782.3	0.93%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	431.0	0.22%	604.0	0.32%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	17508.0	9.04%	18275.2	9.55%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-0.000e+00	1.0000	15276.0	7.89%	16019.3	8.37%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-0.000e+00	1.0000	9503.0	4.91%	10155.8	5.31%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-0.000e+00	1.0000	60941.0	31.47%	61826.7	32.32%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-0.000e+00	1.0000	905.0	0.47%	1155.4	0.60%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	805.0	0.42%	1109.9	0.58%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	0.000e+00	1.0000	23565.0	12.17%	28380.2	14.84%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	48084.0	24.83%	57605.8	30.12%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	0.000e+00	1.0000	19629.0	10.14%	21215.8	11.09%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	0.000e+00	1.0000	31355.0	16.19%	33540.2	17.53%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	0.000e+00	1.0000	37266.0	19.24%	38605.6	20.18%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	43835.0	22.64%	51110.5	26.72%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	7171.0	3.70%	8884.9	4.64%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	0.000e+00	1.0000	4266.0	2.20%	6085.2	3.18%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	1978.0	1.02%	2442.5	1.28%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	31098.0	16.06%	38735.4	20.25%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	24760.0	12.79%	38114.3	19.93%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	0.000e+00	1.0000	38165.0	19.71%	39934.0	20.88%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	46187.0	23.85%	47405.1	24.78%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	4549.0	2.35%	8857.8	4.63%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	0.000e+00	1.0000	716.0	0.37%	1060.7	0.55%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	14434.0	7.45%	22829.4	11.94%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	8402.0	4.34%	14199.7	7.42%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	6932.0	3.58%	12490.4	6.53%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	3901.0	2.01%	7889.6	4.12%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	14178.0	7.32%	16702.0	8.73%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	39803.0	20.55%	45404.2	23.74%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	23247.0	12.00%	33655.2	17.59%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	41549.0	21.46%	47868.0	25.03%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	0.000e+00	1.0000	12283.0	6.34%	13193.5	6.90%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	5896.0	3.04%	7396.0	3.87%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	0.000e+00	1.0000	34152.0	17.64%	36782.2	19.23%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	25768.0	13.31%	33485.8	17.51%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	2138.0	1.10%	4379.9	2.29%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	9670.0	4.99%	12610.8	6.59%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	17114.0	8.84%	18802.1	9.83%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	10303.0	5.32%	13376.7	6.99%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	58859.0	30.39%	63810.2	33.36%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	41068.0	21.21%	47690.0	24.93%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	45429.0	23.46%	50180.8	26.23%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	0.000e+00	1.0000	49242.0	25.43%	51402.2	26.87%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	0.000e+00	1.0000	21121.0	10.91%	22558.3	11.79%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	0.000e+00	1.0000	28857.0	14.90%	31610.6	16.53%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	529.0	0.27%	1410.6	0.74%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	0.000e+00	1.0000	12702.0	6.56%	13505.0	7.06%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	870.0	0.45%	1160.3	0.61%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	83006.0	42.86%	85550.4	44.73%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	57276.0	29.58%	62270.3	32.55%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	56790.0	29.33%	66323.3	34.67%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	0.000e+00	1.0000	4527.0	2.34%	6621.5	3.46%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	8492.0	4.39%	15694.0	8.20%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	23821.0	12.30%	27076.9	14.16%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	13471.0	6.96%	18719.9	9.79%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	8155.0	4.21%	11217.8	5.86%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	10260.0	5.30%	13639.9	7.13%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	23937.0	12.36%	28856.8	15.09%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	11274.0	5.82%	13628.6	7.12%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	21115.0	10.90%	25920.9	13.55%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	4911.0	2.54%	5848.3	3.06%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	3105.0	1.60%	4531.4	2.37%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	18257.0	9.43%	20558.6	10.75%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	71286.0	36.81%	74454.2	38.92%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	0.000e+00	1.0000	19899.0	10.28%	22499.3	11.76%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	10944.0	5.65%	13048.0	6.82%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	21534.0	11.12%	30864.6	16.14%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	0.000e+00	1.0000	6034.0	3.12%	6637.6	3.47%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	27665.0	14.29%	43172.4	22.57%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	15454.0	7.98%	25895.9	13.54%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	0.000e+00	1.0000	335.0	0.17%	607.5	0.32%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	1426.0	0.74%	2011.3	1.05%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	0.000e+00	1.0000	34992.0	18.07%	36581.4	19.12%