Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 30315)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 29838)	% of Background Sequences with Motif
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-4469	-1.029e+04	0.0000	10386.0	34.26%	1930.5	6.47%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-4227	-9.733e+03	0.0000	10853.0	35.81%	2269.8	7.61%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4204	-9.682e+03	0.0000	10060.0	33.19%	1921.3	6.44%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-4151	-9.559e+03	0.0000	9190.0	30.32%	1580.5	5.30%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-3955	-9.109e+03	0.0000	9051.0	29.86%	1614.0	5.41%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-3619	-8.334e+03	0.0000	8116.0	26.78%	1391.7	4.67%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-2609	-6.008e+03	0.0000	5829.0	19.23%	958.2	3.21%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1965	-4.525e+03	0.0000	4269.0	14.08%	662.6	2.22%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1203	-2.771e+03	0.0000	3025.0	9.98%	546.9	1.83%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-342	-7.882e+02	0.0000	3196.0	10.54%	1467.4	4.92%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-340	-7.835e+02	0.0000	7491.0	24.71%	4741.5	15.89%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-337	-7.773e+02	0.0000	1940.0	6.40%	684.9	2.30%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-322	-7.434e+02	0.0000	5019.0	16.56%	2829.1	9.48%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-312	-7.193e+02	0.0000	856.0	2.82%	165.4	0.55%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-311	-7.179e+02	0.0000	782.0	2.58%	137.7	0.46%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-302	-6.969e+02	0.0000	4110.0	13.56%	2200.8	7.38%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e-301	-6.946e+02	0.0000	4752.0	15.68%	2684.3	9.00%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e-296	-6.819e+02	0.0000	3199.0	10.55%	1562.0	5.24%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-293	-6.764e+02	0.0000	734.0	2.42%	128.6	0.43%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-282	-6.505e+02	0.0000	761.0	2.51%	144.4	0.48%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-271	-6.256e+02	0.0000	6089.0	20.09%	3832.6	12.85%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-268	-6.181e+02	0.0000	7888.0	26.02%	5343.3	17.91%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-268	-6.178e+02	0.0000	1470.0	4.85%	501.2	1.68%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-267	-6.157e+02	0.0000	4856.0	16.02%	2864.9	9.60%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-252	-5.811e+02	0.0000	5016.0	16.55%	3037.5	10.18%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-244	-5.620e+02	0.0000	5610.0	18.51%	3541.1	11.87%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e-242	-5.577e+02	0.0000	4751.0	15.67%	2861.7	9.59%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-232	-5.355e+02	0.0000	2400.0	7.92%	1142.1	3.83%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-232	-5.344e+02	0.0000	3684.0	12.15%	2069.5	6.94%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-231	-5.340e+02	0.0000	2379.0	7.85%	1129.4	3.79%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-226	-5.221e+02	0.0000	5761.0	19.01%	3728.4	12.50%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-218	-5.021e+02	0.0000	3854.0	12.71%	2239.7	7.51%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-218	-5.021e+02	0.0000	4426.0	14.60%	2684.1	9.00%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e-207	-4.771e+02	0.0000	619.0	2.04%	130.5	0.44%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-203	-4.685e+02	0.0000	4017.0	13.25%	2411.8	8.08%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-201	-4.633e+02	0.0000	3789.0	12.50%	2241.3	7.51%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e-198	-4.560e+02	0.0000	4472.0	14.75%	2789.7	9.35%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-196	-4.534e+02	0.0000	3315.0	10.94%	1891.1	6.34%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-195	-4.499e+02	0.0000	3579.0	11.81%	2097.7	7.03%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-192	-4.434e+02	0.0000	3693.0	12.18%	2194.4	7.36%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-191	-4.402e+02	0.0000	2331.0	7.69%	1184.5	3.97%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-188	-4.348e+02	0.0000	4141.0	13.66%	2558.6	8.58%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-184	-4.248e+02	0.0000	2268.0	7.48%	1155.9	3.87%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-183	-4.222e+02	0.0000	4045.0	13.34%	2501.2	8.38%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-183	-4.220e+02	0.0000	1623.0	5.35%	718.4	2.41%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-182	-4.194e+02	0.0000	3743.0	12.35%	2267.9	7.60%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-180	-4.163e+02	0.0000	1760.0	5.81%	814.0	2.73%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-180	-4.156e+02	0.0000	13650.0	45.03%	11032.3	36.98%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-170	-3.920e+02	0.0000	3619.0	11.94%	2210.8	7.41%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-161	-3.718e+02	0.0000	4060.0	13.39%	2593.6	8.69%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-152	-3.519e+02	0.0000	662.0	2.18%	191.0	0.64%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-148	-3.430e+02	0.0000	2705.0	8.92%	1572.4	5.27%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-147	-3.407e+02	0.0000	4202.0	13.86%	2762.5	9.26%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-146	-3.377e+02	0.0000	2264.0	7.47%	1248.8	4.19%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-146	-3.370e+02	0.0000	1687.0	5.57%	835.2	2.80%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-145	-3.361e+02	0.0000	3256.0	10.74%	2009.9	6.74%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-129	-2.980e+02	0.0000	3999.0	13.19%	2674.6	8.97%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-123	-2.851e+02	0.0000	4646.0	15.33%	3240.9	10.86%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-120	-2.778e+02	0.0000	1451.0	4.79%	729.1	2.44%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-119	-2.744e+02	0.0000	12572.0	41.48%	10449.2	35.03%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-118	-2.723e+02	0.0000	2391.0	7.89%	1431.0	4.80%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-116	-2.680e+02	0.0000	1935.0	6.38%	1090.4	3.65%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-114	-2.629e+02	0.0000	2813.0	9.28%	1775.2	5.95%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-113	-2.625e+02	0.0000	7417.0	24.47%	5717.1	19.16%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-112	-2.582e+02	0.0000	3823.0	12.61%	2607.0	8.74%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-108	-2.489e+02	0.0000	2083.0	6.87%	1227.6	4.11%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-106	-2.461e+02	0.0000	3982.0	13.14%	2764.1	9.27%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-105	-2.425e+02	0.0000	3717.0	12.26%	2550.1	8.55%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-101	-2.343e+02	0.0000	3904.0	12.88%	2724.9	9.13%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-101	-2.339e+02	0.0000	1841.0	6.07%	1064.1	3.57%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e-100	-2.319e+02	0.0000	5283.0	17.43%	3912.3	13.11%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-99	-2.295e+02	0.0000	1454.0	4.80%	783.6	2.63%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-99	-2.284e+02	0.0000	15575.0	51.38%	13517.7	45.31%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e-95	-2.207e+02	0.0000	3509.0	11.58%	2422.1	8.12%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-85	-1.977e+02	0.0000	5091.0	16.80%	3836.4	12.86%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-85	-1.967e+02	0.0000	2857.0	9.43%	1931.8	6.48%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-83	-1.913e+02	0.0000	1777.0	5.86%	1076.7	3.61%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e-80	-1.855e+02	0.0000	3095.0	10.21%	2152.1	7.21%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-77	-1.796e+02	0.0000	3029.0	9.99%	2110.2	7.07%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-76	-1.771e+02	0.0000	3093.0	10.20%	2169.3	7.27%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-76	-1.768e+02	0.0000	643.0	2.12%	276.7	0.93%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-76	-1.765e+02	0.0000	1215.0	4.01%	672.6	2.25%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-76	-1.753e+02	0.0000	924.0	3.05%	466.0	1.56%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-74	-1.719e+02	0.0000	3227.0	10.65%	2294.3	7.69%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-71	-1.642e+02	0.0000	3565.0	11.76%	2601.3	8.72%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-70	-1.628e+02	0.0000	1704.0	5.62%	1064.1	3.57%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-64	-1.481e+02	0.0000	2507.0	8.27%	1744.0	5.85%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-64	-1.476e+02	0.0000	561.0	1.85%	246.3	0.83%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-62	-1.439e+02	0.0000	1253.0	4.13%	744.1	2.49%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-62	-1.430e+02	0.0000	1809.0	5.97%	1182.8	3.96%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e-60	-1.402e+02	0.0000	494.0	1.63%	209.4	0.70%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-59	-1.378e+02	0.0000	364.0	1.20%	132.6	0.44%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-58	-1.336e+02	0.0000	3670.0	12.11%	2776.6	9.31%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-57	-1.334e+02	0.0000	696.0	2.30%	349.3	1.17%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-57	-1.334e+02	0.0000	696.0	2.30%	349.3	1.17%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-57	-1.327e+02	0.0000	1350.0	4.45%	836.6	2.80%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-56	-1.308e+02	0.0000	5623.0	18.55%	4526.5	15.17%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-56	-1.303e+02	0.0000	867.0	2.86%	475.0	1.59%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-52	-1.215e+02	0.0000	1601.0	5.28%	1055.8	3.54%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e-52	-1.210e+02	0.0000	672.0	2.22%	345.6	1.16%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-48	-1.111e+02	0.0000	4636.0	15.29%	3708.5	12.43%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-48	-1.110e+02	0.0000	8665.0	28.59%	7425.6	24.89%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e-48	-1.108e+02	0.0000	4829.0	15.93%	3883.6	13.02%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-45	-1.053e+02	0.0000	10226.0	33.74%	8932.6	29.94%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-42	-9.842e+01	0.0000	3610.0	11.91%	2836.4	9.51%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-41	-9.670e+01	0.0000	3000.0	9.90%	2303.8	7.72%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-41	-9.471e+01	0.0000	1238.0	4.08%	814.6	2.73%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-40	-9.400e+01	0.0000	842.0	2.78%	504.7	1.69%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-34	-7.949e+01	0.0000	14352.0	47.35%	13074.5	43.83%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-33	-7.601e+01	0.0000	1954.0	6.45%	1457.7	4.89%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-32	-7.486e+01	0.0000	984.0	3.25%	648.7	2.17%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-31	-7.305e+01	0.0000	3257.0	10.75%	2615.1	8.77%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-31	-7.150e+01	0.0000	725.0	2.39%	449.7	1.51%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-28	-6.662e+01	0.0000	1874.0	6.18%	1416.7	4.75%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-28	-6.508e+01	0.0000	7867.0	25.95%	6928.4	23.22%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-28	-6.483e+01	0.0000	3440.0	11.35%	2814.9	9.44%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-27	-6.411e+01	0.0000	6631.0	21.88%	5768.7	19.34%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-27	-6.337e+01	0.0000	1214.0	4.01%	862.1	2.89%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-27	-6.314e+01	0.0000	5705.0	18.82%	4907.5	16.45%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-27	-6.310e+01	0.0000	3340.0	11.02%	2731.5	9.16%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-27	-6.283e+01	0.0000	4980.0	16.43%	4235.6	14.20%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-27	-6.227e+01	0.0000	12854.0	42.41%	11738.9	39.35%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-26	-6.115e+01	0.0000	2035.0	6.71%	1574.5	5.28%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-26	-6.071e+01	0.0000	4917.0	16.22%	4188.2	14.04%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-26	-6.003e+01	0.0000	927.0	3.06%	632.3	2.12%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-25	-5.759e+01	0.0000	7893.0	26.04%	7002.7	23.47%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-24	-5.683e+01	0.0000	4409.0	14.55%	3739.0	12.53%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-23	-5.448e+01	0.0000	5396.0	17.80%	4669.1	15.65%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-23	-5.358e+01	0.0000	2182.0	7.20%	1731.2	5.80%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-22	-5.223e+01	0.0000	3260.0	10.76%	2708.6	9.08%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-22	-5.181e+01	0.0000	5307.0	17.51%	4602.6	15.43%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-22	-5.083e+01	0.0000	756.0	2.49%	512.7	1.72%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-21	-5.050e+01	0.0000	3546.0	11.70%	2978.8	9.99%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-21	-4.945e+01	0.0000	497.0	1.64%	308.2	1.03%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-21	-4.903e+01	0.0000	3314.0	10.93%	2773.4	9.30%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e-20	-4.617e+01	0.0000	3810.0	12.57%	3244.1	10.87%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-19	-4.538e+01	0.0000	5367.0	17.71%	4699.3	15.75%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-19	-4.519e+01	0.0000	363.0	1.20%	212.6	0.71%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-18	-4.302e+01	0.0000	3481.0	11.48%	2958.1	9.92%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e-18	-4.297e+01	0.0000	5173.0	17.07%	4533.8	15.20%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-18	-4.296e+01	0.0000	451.0	1.49%	283.9	0.95%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-18	-4.176e+01	0.0000	7401.0	24.42%	6650.5	22.29%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-18	-4.166e+01	0.0000	1872.0	6.18%	1502.9	5.04%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e-18	-4.162e+01	0.0000	2244.0	7.40%	1836.7	6.16%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-17	-4.110e+01	0.0000	709.0	2.34%	495.9	1.66%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-17	-4.099e+01	0.0000	1926.0	6.35%	1553.0	5.21%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-17	-4.081e+01	0.0000	3726.0	12.29%	3197.2	10.72%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-17	-4.068e+01	0.0000	613.0	2.02%	417.7	1.40%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-17	-3.973e+01	0.0000	290.0	0.96%	165.2	0.55%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-17	-3.960e+01	0.0000	3407.0	11.24%	2909.9	9.75%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-17	-3.944e+01	0.0000	7306.0	24.10%	6578.4	22.05%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-16	-3.899e+01	0.0000	846.0	2.79%	615.9	2.06%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-16	-3.883e+01	0.0000	3055.0	10.08%	2589.0	8.68%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-16	-3.838e+01	0.0000	1947.0	6.42%	1583.1	5.31%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-16	-3.834e+01	0.0000	8196.0	27.04%	7438.7	24.93%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-16	-3.827e+01	0.0000	2466.0	8.14%	2053.6	6.88%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-16	-3.780e+01	0.0000	6169.0	20.35%	5510.6	18.47%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-16	-3.776e+01	0.0000	571.0	1.88%	389.2	1.30%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-16	-3.769e+01	0.0000	4654.0	15.35%	4082.0	13.68%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-16	-3.764e+01	0.0000	429.0	1.42%	275.7	0.92%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-16	-3.712e+01	0.0000	5325.0	17.57%	4717.2	15.81%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-16	-3.692e+01	0.0000	450.0	1.48%	293.5	0.98%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-15	-3.590e+01	0.0000	2489.0	8.21%	2086.4	6.99%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-15	-3.588e+01	0.0000	745.0	2.46%	538.3	1.80%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-15	-3.542e+01	0.0000	1001.0	3.30%	758.6	2.54%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-14	-3.392e+01	0.0000	3993.0	13.17%	3489.2	11.70%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-13	-3.214e+01	0.0000	5985.0	19.75%	5381.9	18.04%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-13	-3.211e+01	0.0000	5076.0	16.75%	4520.7	15.15%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-13	-3.204e+01	0.0000	1583.0	5.22%	1284.2	4.30%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-13	-3.191e+01	0.0000	640.0	2.11%	460.8	1.54%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-13	-3.097e+01	0.0000	2546.0	8.40%	2165.2	7.26%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-13	-3.036e+01	0.0000	740.0	2.44%	549.5	1.84%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-12	-2.958e+01	0.0000	2597.0	8.57%	2220.6	7.44%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-12	-2.910e+01	0.0000	2187.0	7.22%	1846.4	6.19%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e-12	-2.904e+01	0.0000	2028.0	6.69%	1701.7	5.70%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e-12	-2.894e+01	0.0000	8800.0	29.03%	8107.0	27.17%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-12	-2.816e+01	0.0000	129.0	0.43%	63.3	0.21%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-12	-2.808e+01	0.0000	1707.0	5.63%	1414.4	4.74%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-12	-2.790e+01	0.0000	431.0	1.42%	296.6	0.99%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-11	-2.664e+01	0.0000	2650.0	8.74%	2287.5	7.67%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-11	-2.656e+01	0.0000	1181.0	3.90%	948.5	3.18%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-10	-2.522e+01	0.0000	754.0	2.49%	577.0	1.93%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e-10	-2.492e+01	0.0000	2487.0	8.20%	2147.8	7.20%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-10	-2.477e+01	0.0000	1121.0	3.70%	902.7	3.03%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-10	-2.413e+01	0.0000	14067.0	46.41%	13288.6	44.54%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-10	-2.338e+01	0.0000	251.0	0.83%	160.3	0.54%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-10	-2.304e+01	0.0000	1376.0	4.54%	1139.2	3.82%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-9	-2.244e+01	0.0000	3619.0	11.94%	3223.1	10.80%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-9	-2.195e+01	0.0000	249.0	0.82%	161.2	0.54%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e-9	-2.156e+01	0.0000	1664.0	5.49%	1409.5	4.72%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-8	-1.985e+01	0.0000	1021.0	3.37%	834.7	2.80%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-8	-1.963e+01	0.0000	1153.0	3.80%	954.5	3.20%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-8	-1.928e+01	0.0000	1668.0	5.50%	1426.6	4.78%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-8	-1.864e+01	0.0000	3394.0	11.20%	3043.5	10.20%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-7	-1.824e+01	0.0000	6081.0	20.06%	5608.6	18.80%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-7	-1.767e+01	0.0000	418.0	1.38%	311.1	1.04%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-7	-1.728e+01	0.0000	2018.0	6.66%	1763.2	5.91%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-7	-1.704e+01	0.0000	1628.0	5.37%	1403.9	4.71%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-7	-1.640e+01	0.0000	202.0	0.67%	134.8	0.45%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-6	-1.585e+01	0.0000	1059.0	3.49%	888.0	2.98%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-6	-1.579e+01	0.0000	1912.0	6.31%	1675.8	5.62%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-6	-1.470e+01	0.0000	1666.0	5.50%	1454.1	4.87%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-6	-1.413e+01	0.0000	6296.0	20.77%	5866.1	19.66%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-6	-1.399e+01	0.0000	619.0	2.04%	500.2	1.68%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-5	-1.379e+01	0.0000	2799.0	9.23%	2525.1	8.46%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-5	-1.364e+01	0.0000	4967.0	16.39%	4594.9	15.40%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-5	-1.335e+01	0.0000	1071.0	3.53%	913.4	3.06%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-5	-1.305e+01	0.0000	1622.0	5.35%	1425.9	4.78%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-5	-1.256e+01	0.0000	4638.0	15.30%	4292.6	14.39%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-5	-1.253e+01	0.0000	2542.0	8.39%	2294.1	7.69%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-5	-1.241e+01	0.0000	428.0	1.41%	337.6	1.13%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-5	-1.174e+01	0.0000	957.0	3.16%	819.0	2.75%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-5	-1.162e+01	0.0000	5683.0	18.75%	5310.4	17.80%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-5	-1.159e+01	0.0000	638.0	2.10%	528.5	1.77%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-4	-1.135e+01	0.0000	2272.0	7.50%	2050.0	6.87%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-4	-1.115e+01	0.0000	1933.0	6.38%	1732.0	5.81%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-4	-1.114e+01	0.0000	282.0	0.93%	214.2	0.72%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-4	-1.088e+01	0.0000	238.0	0.79%	177.7	0.60%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-4	-1.083e+01	0.0000	553.0	1.82%	455.2	1.53%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-4	-1.073e+01	0.0000	897.0	2.96%	769.3	2.58%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-4	-1.050e+01	0.0001	1880.0	6.20%	1688.1	5.66%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-4	-1.023e+01	0.0001	1906.0	6.29%	1715.2	5.75%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e-4	-9.598e+00	0.0001	2569.0	8.48%	2350.3	7.88%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-4	-9.556e+00	0.0001	3190.0	10.52%	2943.0	9.87%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-3	-8.947e+00	0.0002	1306.0	4.31%	1162.9	3.90%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-3	-8.630e+00	0.0003	3024.0	9.98%	2796.3	9.37%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-3	-8.124e+00	0.0006	313.0	1.03%	252.7	0.85%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-3	-8.071e+00	0.0006	1633.0	5.39%	1478.3	4.96%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e-3	-7.798e+00	0.0008	3075.0	10.14%	2856.8	9.58%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-3	-7.685e+00	0.0009	2215.0	7.31%	2035.4	6.82%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-3	-6.998e+00	0.0017	1370.0	4.52%	1240.3	4.16%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e-2	-6.798e+00	0.0021	3190.0	10.52%	2981.6	9.99%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-6.790e+00	0.0021	311.0	1.03%	256.7	0.86%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-6.695e+00	0.0023	842.0	2.78%	746.4	2.50%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-2	-6.560e+00	0.0026	531.0	1.75%	459.0	1.54%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-2	-6.540e+00	0.0026	3515.0	11.60%	3298.1	11.06%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-6.251e+00	0.0035	1968.0	6.49%	1817.8	6.09%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-5.811e+00	0.0054	1242.0	4.10%	1131.2	3.79%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-2	-5.739e+00	0.0058	1583.0	5.22%	1456.4	4.88%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-5.541e+00	0.0070	1143.0	3.77%	1040.5	3.49%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-2	-5.487e+00	0.0074	2389.0	7.88%	2231.6	7.48%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-2	-5.396e+00	0.0080	1395.0	4.60%	1281.0	4.29%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-2	-5.334e+00	0.0085	386.0	1.27%	332.7	1.12%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-2	-5.247e+00	0.0092	1541.0	5.08%	1422.4	4.77%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-4.874e+00	0.0133	1294.0	4.27%	1191.9	4.00%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-2	-4.823e+00	0.0140	2648.0	8.74%	2491.4	8.35%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-2	-4.793e+00	0.0144	765.0	2.52%	690.9	2.32%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-2	-4.757e+00	0.0148	51.0	0.17%	35.4	0.12%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-4.700e+00	0.0156	2267.0	7.48%	2126.4	7.13%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-4.579e+00	0.0176	610.0	2.01%	547.0	1.83%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-4.554e+00	0.0179	1059.0	3.49%	971.5	3.26%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.468e+00	0.0195	918.0	3.03%	838.9	2.81%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-4.268e+00	0.0237	785.0	2.59%	715.0	2.40%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-1	-3.903e+00	0.0340	44.0	0.15%	31.9	0.11%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-3.731e+00	0.0402	353.0	1.16%	312.1	1.05%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-3.560e+00	0.0475	2004.0	6.61%	1892.2	6.34%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.557e+00	0.0475	168.0	0.55%	142.9	0.48%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.409e+00	0.0549	269.0	0.89%	236.8	0.79%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1	-3.355e+00	0.0577	5128.0	16.92%	4931.8	16.53%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.291e+00	0.0613	2034.0	6.71%	1926.7	6.46%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.225e+00	0.0652	48.0	0.16%	36.6	0.12%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-3.057e+00	0.0768	44.0	0.15%	33.2	0.11%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.990e+00	0.0819	439.0	1.45%	399.1	1.34%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.888e+00	0.0902	558.0	1.84%	513.4	1.72%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e-1	-2.811e+00	0.0971	3237.0	10.68%	3104.3	10.41%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.699e+00	0.1083	52.0	0.17%	41.2	0.14%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.679e+00	0.1100	1697.0	5.60%	1612.2	5.40%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.655e+00	0.1123	260.0	0.86%	234.0	0.78%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-2.600e+00	0.1182	1498.0	4.94%	1421.3	4.76%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-2.443e+00	0.1378	1080.0	3.56%	1020.1	3.42%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.369e+00	0.1478	1516.0	5.00%	1443.4	4.84%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-2.299e+00	0.1578	463.0	1.53%	429.4	1.44%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.207e+00	0.1725	741.0	2.44%	697.7	2.34%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.093e+00	0.1926	274.0	0.90%	251.2	0.84%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-2.032e+00	0.2041	3178.0	10.48%	3069.4	10.29%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.956e+00	0.2193	710.0	2.34%	671.3	2.25%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.950e+00	0.2199	147.0	0.48%	132.0	0.44%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.932e+00	0.2229	49.0	0.16%	41.1	0.14%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.848e+00	0.2416	1391.0	4.59%	1333.2	4.47%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.842e+00	0.2422	284.0	0.94%	263.5	0.88%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.767e+00	0.2602	135.0	0.45%	122.2	0.41%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.366e+00	0.3872	1074.0	3.54%	1036.1	3.47%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.189e+00	0.4605	489.0	1.61%	470.6	1.58%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.172e+00	0.4667	1575.0	5.20%	1531.1	5.13%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.156e+00	0.4728	25.0	0.08%	22.5	0.08%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.070e+00	0.5135	3197.0	10.55%	3125.2	10.48%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.017e+00	0.5394	2798.0	9.23%	2736.6	9.17%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.010e+00	0.5415	191.0	0.63%	183.8	0.62%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.859e-01	0.6107	62.0	0.20%	59.4	0.20%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.942e-01	0.6670	618.0	2.04%	605.7	2.03%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.734e-01	0.6787	938.0	3.09%	920.4	3.09%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.564e-01	0.6880	67.0	0.22%	65.8	0.22%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-7.474e-01	0.6918	578.0	1.91%	567.1	1.90%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.138e-01	0.7130	575.0	1.90%	565.7	1.90%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-6.781e-01	0.7364	317.0	1.05%	312.7	1.05%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.491e-01	0.8350	505.0	1.67%	501.3	1.68%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.968e-01	0.8768	252.0	0.83%	252.4	0.85%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-3.533e-01	1.0000	26.0	0.09%	28.1	0.09%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-3.379e-01	1.0000	736.0	2.43%	739.8	2.48%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-3.317e-01	1.0000	3421.0	11.29%	3398.0	11.39%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.023e-01	1.0000	350.0	1.15%	356.8	1.20%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.600e-01	1.0000	76.0	0.25%	81.6	0.27%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.584e-01	1.0000	354.0	1.17%	362.8	1.22%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.552e-01	1.0000	72.0	0.24%	77.2	0.26%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-2.156e-01	1.0000	7.0	0.02%	9.6	0.03%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.802e-01	1.0000	5715.0	18.85%	5690.9	19.08%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.652e-01	1.0000	252.0	0.83%	264.6	0.89%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.353e-01	1.0000	63.0	0.21%	71.5	0.24%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.176e-01	1.0000	1298.0	4.28%	1320.8	4.43%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.155e-01	1.0000	284.0	0.94%	300.9	1.01%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.040e-01	1.0000	170.0	0.56%	184.8	0.62%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-9.821e-02	1.0000	3798.0	12.53%	3813.2	12.78%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-9.122e-02	1.0000	1438.0	4.74%	1465.6	4.91%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-8.746e-02	1.0000	115.0	0.38%	128.5	0.43%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.960e-02	1.0000	339.0	1.12%	361.0	1.21%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-6.040e-02	1.0000	1525.0	5.03%	1560.6	5.23%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-5.823e-02	1.0000	109.0	0.36%	124.4	0.42%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-5.807e-02	1.0000	26.0	0.09%	34.4	0.12%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-5.763e-02	1.0000	757.0	2.50%	788.2	2.64%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.097e-02	1.0000	577.0	1.90%	607.7	2.04%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-4.553e-02	1.0000	561.0	1.85%	592.5	1.99%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.246e-02	1.0000	236.0	0.78%	259.8	0.87%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.246e-02	1.0000	236.0	0.78%	259.8	0.87%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.674e-02	1.0000	77.0	0.25%	92.5	0.31%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.313e-02	1.0000	889.0	2.93%	929.2	3.11%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.517e-02	1.0000	5686.0	18.76%	5728.7	19.20%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.816e-02	1.0000	25.0	0.08%	36.0	0.12%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.620e-02	1.0000	691.0	2.28%	736.5	2.47%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.557e-02	1.0000	6186.0	20.41%	6238.4	20.91%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.352e-02	1.0000	157.0	0.52%	183.1	0.61%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.082e-02	1.0000	9.0	0.03%	17.6	0.06%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-9.714e-03	1.0000	313.0	1.03%	350.7	1.18%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-8.785e-03	1.0000	7367.0	24.30%	7427.0	24.90%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.609e-03	1.0000	203.0	0.67%	237.9	0.80%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.906e-03	1.0000	144.0	0.48%	174.4	0.58%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.444e-03	1.0000	498.0	1.64%	551.7	1.85%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.377e-03	1.0000	651.0	2.15%	710.9	2.38%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.889e-03	1.0000	11.0	0.04%	23.0	0.08%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.904e-03	1.0000	5378.0	17.74%	5485.0	18.39%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.865e-03	1.0000	5048.0	16.65%	5155.6	17.28%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.791e-03	1.0000	4868.0	16.06%	4976.8	16.68%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.484e-03	1.0000	182.0	0.60%	221.6	0.74%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-1.173e-03	1.0000	2299.0	7.58%	2403.5	8.06%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.470e-04	1.0000	143.0	0.47%	181.3	0.61%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.840e-04	1.0000	37.0	0.12%	59.2	0.20%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.110e-04	1.0000	75.0	0.25%	105.0	0.35%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.060e-04	1.0000	14394.0	47.49%	14469.8	48.50%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.110e-04	1.0000	267.0	0.88%	326.8	1.10%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-9.600e-05	1.0000	7.0	0.02%	21.3	0.07%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-9.300e-05	1.0000	936.0	3.09%	1036.7	3.48%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.000e-05	1.0000	8274.0	27.30%	8452.8	28.33%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.400e-05	1.0000	12.0	0.04%	31.1	0.10%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.200e-05	1.0000	634.0	2.09%	729.4	2.44%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-2.000e-05	1.0000	424.0	1.40%	505.2	1.69%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.500e-05	1.0000	6141.0	20.26%	6335.4	21.24%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-9.000e-06	1.0000	838.0	2.76%	951.0	3.19%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-9.000e-06	1.0000	108.0	0.36%	156.4	0.52%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.000e-06	1.0000	944.0	3.11%	1068.1	3.58%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.000e-06	1.0000	1963.0	6.48%	2132.0	7.15%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.000e-06	1.0000	639.0	2.11%	749.3	2.51%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	1879.0	6.20%	2059.5	6.90%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-0.000e+00	1.0000	507.0	1.67%	615.1	2.06%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-0.000e+00	1.0000	141.0	0.47%	207.4	0.70%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	358.0	1.18%	458.7	1.54%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-0.000e+00	1.0000	205.0	0.68%	286.6	0.96%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-0.000e+00	1.0000	2154.0	7.11%	2373.1	7.95%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-0.000e+00	1.0000	193.0	0.64%	276.0	0.93%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-0.000e+00	1.0000	1794.0	5.92%	2002.7	6.71%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-0.000e+00	1.0000	53.0	0.17%	103.3	0.35%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	2608.0	8.60%	2848.1	9.55%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-0.000e+00	1.0000	134.0	0.44%	208.3	0.70%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-0.000e+00	1.0000	734.0	2.42%	885.2	2.97%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-0.000e+00	1.0000	3394.0	11.20%	3664.8	12.28%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-0.000e+00	1.0000	626.0	2.07%	777.2	2.61%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-0.000e+00	1.0000	970.0	3.20%	1152.0	3.86%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-0.000e+00	1.0000	4072.0	13.43%	4379.6	14.68%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	2078.0	6.86%	2340.6	7.85%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-0.000e+00	1.0000	305.0	1.01%	428.2	1.44%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-0.000e+00	1.0000	105.0	0.35%	185.7	0.62%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-0.000e+00	1.0000	256.0	0.84%	372.2	1.25%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-0.000e+00	1.0000	2225.0	7.34%	2517.3	8.44%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-0.000e+00	1.0000	1601.0	5.28%	1870.9	6.27%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	2453.0	8.09%	2776.7	9.31%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	534.0	1.76%	711.6	2.39%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-0.000e+00	1.0000	2155.0	7.11%	2485.6	8.33%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	0.000e+00	1.0000	2982.0	9.84%	4136.9	13.87%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	8047.0	26.55%	9587.9	32.14%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	7431.0	24.52%	8565.2	28.71%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	0.000e+00	1.0000	1191.0	3.93%	1656.8	5.55%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	0.000e+00	1.0000	682.0	2.25%	1138.0	3.81%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	0.000e+00	1.0000	4107.0	13.55%	5890.1	19.74%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	0.000e+00	1.0000	2971.0	9.80%	5905.6	19.80%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	0.000e+00	1.0000	6152.0	20.30%	6923.1	23.21%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	0.000e+00	1.0000	690.0	2.28%	1544.0	5.18%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	0.000e+00	1.0000	2332.0	7.69%	4054.3	13.59%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	1297.0	4.28%	2517.5	8.44%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	0.000e+00	1.0000	1075.0	3.55%	2192.5	7.35%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	0.000e+00	1.0000	586.0	1.93%	1369.8	4.59%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	0.000e+00	1.0000	5355.0	17.67%	6201.4	20.79%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	4035.0	13.31%	5688.1	19.07%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	0.000e+00	1.0000	5582.0	18.42%	7242.6	24.28%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	947.0	3.12%	1369.0	4.59%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	0.000e+00	1.0000	2234.0	7.37%	4292.6	14.39%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	394.0	1.30%	704.6	2.36%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	0.000e+00	1.0000	9596.0	31.66%	10733.9	35.98%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	0.000e+00	1.0000	6580.0	21.71%	7851.6	26.32%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	7418.0	24.47%	8519.2	28.56%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	63.0	0.21%	256.6	0.86%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	0.000e+00	1.0000	126.0	0.42%	243.1	0.81%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	0.000e+00	1.0000	8152.0	26.89%	9651.2	32.35%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	0.000e+00	1.0000	9955.0	32.84%	11066.7	37.10%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	0.000e+00	1.0000	711.0	2.35%	1203.5	4.03%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	0.000e+00	1.0000	941.0	3.10%	2355.3	7.89%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	4036.0	13.32%	4722.2	15.83%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	2317.0	7.64%	3206.5	10.75%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	1388.0	4.58%	1978.4	6.63%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	1754.0	5.79%	2358.2	7.90%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	4145.0	13.67%	5038.8	16.89%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	0.000e+00	1.0000	1837.0	6.06%	2311.1	7.75%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	3809.0	12.57%	4678.1	15.68%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	0.000e+00	1.0000	2967.0	9.79%	3639.9	12.20%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	0.000e+00	1.0000	11562.0	38.14%	12462.6	41.77%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	0.000e+00	1.0000	3046.0	10.05%	3819.1	12.80%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	0.000e+00	1.0000	3484.0	11.49%	5474.8	18.35%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	0.000e+00	1.0000	51.0	0.17%	144.6	0.48%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	0.000e+00	1.0000	8228.0	27.15%	8880.4	29.77%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	0.000e+00	1.0000	3309.0	10.92%	6606.5	22.14%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	0.000e+00	1.0000	1896.0	6.26%	4004.4	13.42%