Information for 16-RSTGARCTAY (Motif 11)

C T G A A T C G C A G T T C A G G T C A T C G A A T G C A G C T C T G A A G C T
Reverse Opposite:
T C G A G A C T C T G A T A C G A G C T C A G T A G T C G T C A T A G C G A C T
p-value:1e-109
log p-value:-2.511e+02
Information Content per bp:1.553
Number of Target Sequences with motif1262.0
Percentage of Target Sequences with motif6.29%
Number of Background Sequences with motif917.6
Percentage of Background Sequences with motif3.18%
Average Position of motif in Targets103.6 +/- 42.7bp
Average Position of motif in Background95.5 +/- 61.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:RSTGARCTAY-
-TTGAMCTTTG
 C T G A A T C G C A G T T C A G G T C A T C G A A T G C A G C T C T G A A G C T A C G T
A C G T A G C T A G C T C A T G C T G A G T A C A G T C A G C T A G C T C A G T C T A G

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:RSTGARCTAY--
--TGACCTTGAT
 C T G A A T C G C A G T T C A G G T C A T C G A A T G C A G C T C T G A A G C T A C G T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:RSTGARCTAY
--TGACCT--
 C T G A A T C G C A G T T C A G G T C A T C G A A T G C A G C T C T G A A G C T
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:RSTGARCTAY
-GTGACCTT-
 C T G A A T C G C A G T T C A G G T C A T C G A A T G C A G C T C T G A A G C T
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--RSTGARCTAY----
NNNGTGACCTTTGNNN
 A C G T A C G T C T G A A T C G C A G T T C A G G T C A T C G A A T G C A G C T C T G A A G C T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

NR2F2/MA1111.1/Jaspar

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:RSTGARCTAY-
NNTGACCTTTN
 C T G A A T C G C A G T T C A G G T C A T C G A A T G C A G C T C T G A A G C T A C G T
G A C T G A C T G A C T C T A G T G C A G A T C G T A C G A C T G C A T C A G T C T A G

NR4A1/MA1112.1/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:RSTGARCTAY-
-NTGACCTTTN
 C T G A A T C G C A G T T C A G G T C A T C G A A T G C A G C T C T G A A G C T A C G T
A C G T C A T G G A C T C A T G T C G A A G T C T A G C C A G T G C A T G A C T G C A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:RSTGARCTAY-----
-TTGACCTANTTATN
 C T G A A T C G C A G T T C A G G T C A T C G A A T G C A G C T C T G A A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:RSTGARCTAY----
--TGACCTYTGVMC
 C T G A A T C G C A G T T C A G G T C A T C G A A T G C A G C T C T G A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T T C A G T G C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A T G A C A T G C

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.65
Offset:2
Orientation:forward strand
Alignment:RSTGARCTAY----
--TGACCTTTNCNT
 C T G A A T C G C A G T T C A G G T C A T C G A A T G C A G C T C T G A A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T