Information for 5-GKBCAAAGTYCA (Motif 2)

C T A G C A G T A T G C G A T C G T C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A
Reverse Opposite:
C G A T C T A G T C A G G T C A T G A C G A C T A G C T C A G T C T A G T A C G G T C A G A T C
p-value:1e-781
log p-value:-1.800e+03
Information Content per bp:1.590
Number of Target Sequences with motif3798.0
Percentage of Target Sequences with motif18.93%
Number of Background Sequences with motif1837.6
Percentage of Background Sequences with motif6.37%
Average Position of motif in Targets99.6 +/- 49.5bp
Average Position of motif in Background98.3 +/- 62.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.96
Offset:-3
Orientation:forward strand
Alignment:---GKBCAAAGTYCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T C T A G C A G T A T G C G A T C G T C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.96
Offset:-4
Orientation:forward strand
Alignment:----GKBCAAAGTYCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T C T A G C A G T A T G C G A T C G T C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--GKBCAAAGTYCA--
GGGGTCAAAGTCCAAT
 A C G T A C G T C T A G C A G T A T G C G A T C G T C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:4
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---GKBCAAAGTYCA
VNAGGKCAAAGGTCA
 A C G T A C G T A C G T C T A G C A G T A T G C G A T C G T C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A
T G A C C G A T C T G A C T A G C T A G A C G T A T G C T G C A T C G A C T G A C T A G C A T G A C G T A G T C C G T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.84
Offset:3
Orientation:forward strand
Alignment:GKBCAAAGTYCA-
---CAAAGGTCAG
 C T A G C A G T A T G C G A T C G T C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--GKBCAAAGTYCA
TAGGGCAAAGGTCA
 A C G T A C G T C T A G C A G T A T G C G A T C G T C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.82
Offset:0
Orientation:forward strand
Alignment:GKBCAAAGTYCA----
GGCAAAAGTCCAATAA
 C T A G C A G T A T G C G A T C G T C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---GKBCAAAGTYCA
GTAGGGCAAAGGTCA
 A C G T A C G T A C G T C T A G C A G T A T G C G A T C G T C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--GKBCAAAGTYCA
TGGGGCAAAGGTCA
 A C G T A C G T C T A G C A G T A T G C G A T C G T C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GKBCAAAGTYCA
GAGGTCAAAGGTCA
 A C G T A C G T C T A G C A G T A T G C G A T C G T C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A