Information for 24-CCCTTTGTCGAG (Motif 20)

A T G C G A T C G A T C G A C T A C G T C A G T A T C G A G C T A T G C T A C G C G T A T A C G
Reverse Opposite:
A T G C G C A T A T G C T A C G T C G A T A G C G T C A T G C A C T G A C T A G C T A G T A C G
p-value:1e-30
log p-value:-7.130e+01
Information Content per bp:1.443
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets105.2 +/- 45.3bp
Average Position of motif in Background153.5 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CCCTTTGTCGAG
-CCTTTGTT---
 A T G C G A T C G A T C G A C T A C G T C A G T A T C G A G C T A T G C T A C G C G T A T A C G
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CCCTTTGTCGAG
-CCWTTGTY---
 A T G C G A T C G A T C G A C T A C G T C A G T A T C G A G C T A T G C T A C G C G T A T A C G
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T

SOX10/MA0442.2/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CCCTTTGTCGAG
NNCTTTGTTNN-
 A T G C G A T C G A T C G A C T A C G T C A G T A T C G A G C T A T G C T A C G C G T A T A C G
A C G T A G C T T G A C C G A T C G A T C G A T T C A G C G A T A C G T G A C T G A C T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CCCTTTGTCGAG
-CCTTTGTTTT-
 A T G C G A T C G A T C G A C T A C G T C A G T A T C G A G C T A T G C T A C G C G T A T A C G
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:5
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----CCCTTTGTCGAG
AGGVNCCTTTGT----
 A C G T A C G T A C G T A C G T A T G C G A T C G A T C G A C T A C G T C A G T A T C G A G C T A T G C T A C G C G T A T A C G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:6
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCCTTTGTCGAG
-CCWTTGTYYB-
 A T G C G A T C G A T C G A C T A C G T C A G T A T C G A G C T A T G C T A C G C G T A T A C G
A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CCCTTTGTCGAG
-YCTTTGTTCC-
 A T G C G A T C G A T C G A C T A C G T C A G T A T C G A G C T A T G C T A C G C G T A T A C G
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CCCTTTGTCGAG-
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A T G C G A T C G A T C G A C T A C G T C A G T A T C G A G C T A T G C T A C G C G T A T A C G A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CCCTTTGTCGAG--
ANTCCTTTGTCTNNNN
 A C G T A C G T A T G C G A T C G A T C G A C T A C G T C A G T A T C G A G C T A T G C T A C G C G T A T A C G A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCCTTTGTCGAG
NCCATTGTTC--
 A T G C G A T C G A T C G A C T A C G T C A G T A T C G A G C T A T G C T A C G C G T A T A C G
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T