Information for 1-TGSMCTTTGNCC (Motif 1)

G A C T A C T G T A C G G T A C G T A C A G C T A G C T A C G T T C A G T A C G G A T C A G T C
Reverse Opposite:
C T A G C T A G A T G C A G T C G T C A C T G A C T G A A C T G C A T G A T G C G T A C C T G A
p-value:1e-62
log p-value:-1.442e+02
Information Content per bp:1.617
Number of Target Sequences with motif497.0
Percentage of Target Sequences with motif9.45%
Number of Background Sequences with motif1827.1
Percentage of Background Sequences with motif4.11%
Average Position of motif in Targets100.0 +/- 53.1bp
Average Position of motif in Background99.3 +/- 55.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:TGSMCTTTGNCC---
TGGACTTTGNNCTCN
 G A C T A C T G T A C G G T A C G T A C A G C T A G C T A C G T T C A G T A C G G A T C A G T C A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TGSMCTTTGNCC----
TGGACTTTGNNCTNTG
 G A C T A C T G T A C G G T A C G T A C A G C T A G C T A C G T T C A G T A C G G A T C A G T C A C G T A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer

Match Rank:3
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:TGSMCTTTGNCC---
TGACCTTTGMCCTNB
 G A C T A C T G T A C G G T A C G T A C A G C T A G C T A C G T T C A G T A C G G A T C A G T C A C G T A C G T A C G T
G C A T T C A G T G C A G T A C G A T C A G C T A G C T A C G T T A C G T G C A G A T C G A T C G A C T G C T A A C T G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:TGSMCTTTGNCC--
TGACCTTTGCCCTA
 G A C T A C T G T A C G G T A C G T A C A G C T A G C T A C G T T C A G T A C G G A T C A G T C A C G T A C G T
A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:TGSMCTTTGNCC---
TGACCTTTGCCCTAN
 G A C T A C T G T A C G G T A C G T A C A G C T A G C T A C G T T C A G T A C G G A T C A G T C A C G T A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TGSMCTTTGNCC--
TGACCTTTGCCCCA
 G A C T A C T G T A C G G T A C G T A C A G C T A G C T A C G T T C A G T A C G G A T C A G T C A C G T A C G T
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Hnf4a/MA0114.3/Jaspar

Match Rank:7
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--TGSMCTTTGNCC--
ATTGGACTTTGACCCC
 A C G T A C G T G A C T A C T G T A C G G T A C G T A C A G C T A G C T A C G T T C A G T A C G G A T C A G T C A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-TGSMCTTTGNCC
CTGACCTTTG---
 A C G T G A C T A C T G T A C G G T A C G T A C A G C T A G C T A C G T T C A G T A C G G A T C A G T C
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TGSMCTTTGNCC--
TGACCTTTGACCTC
 G A C T A C T G T A C G G T A C G T A C A G C T A G C T A C G T T C A G T A C G G A T C A G T C A C G T A C G T
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

NR2C2/MA0504.1/Jaspar

Match Rank:10
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TGSMCTTTGNCC---
TGACCTCTGACCCCN
 G A C T A C T G T A C G G T A C G T A C A G C T A G C T A C G T T C A G T A C G G A T C A G T C A C G T A C G T A C G T
G A C T T C A G T G C A G T A C A G T C A G C T A G T C G A C T T A C G G T C A G T A C T G A C A G T C A G T C A C G T