Information for 11-AGGCCACTCG (Motif 13)

G T C A A T C G C A T G G A T C T A G C T C G A T G A C C G A T A T G C T C A G
Reverse Opposite:
A G T C T A C G G C T A A C T G A G C T A T C G C A T G G A T C T A G C C A G T
p-value:1e-15
log p-value:-3.552e+01
Information Content per bp:1.645
Number of Target Sequences with motif838.0
Percentage of Target Sequences with motif15.94%
Number of Background Sequences with motif5397.3
Percentage of Background Sequences with motif12.15%
Average Position of motif in Targets102.3 +/- 56.1bp
Average Position of motif in Background99.3 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGGCCACTCG
AAGGTCAC---
 A C G T G T C A A T C G C A T G G A T C T A G C T C G A T G A C C G A T A T G C T C A G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGGCCACTCG-
-AASCACTCAA
 G T C A A T C G C A T G G A T C T A G C T C G A T G A C C G A T A T G C T C A G A C G T
A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AGGCCACTCG--
--NSCACTYVAV
 G T C A A T C G C A T G G A T C T A G C T C G A T G A C C G A T A T G C T C A G A C G T A C G T
A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGGCCACTCG--
--RSCACTYRAG
 G T C A A T C G C A T G G A T C T A G C T C G A T G A C C G A T A T G C T C A G A C G T A C G T
A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AGGCCACTCG-
-AGCCAATCGG
 G T C A A T C G C A T G G A T C T A G C T C G A T G A C C G A T A T G C T C A G A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

PH0171.1_Nkx2-1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGCCACTCG-----
TAAGCCACTTGAAATT
 A C G T G T C A A T C G C A T G G A T C T A G C T C G A T G A C C G A T A T G C T C A G A C G T A C G T A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGGCCACTCG--
---CCACTTGAA
 G T C A A T C G C A T G G A T C T A G C T C G A T G A C C G A T A T G C T C A G A C G T A C G T
A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGGCCACTCG
CTAGGCCT----
 A C G T A C G T G T C A A T C G C A T G G A T C T A G C T C G A T G A C C G A T A T G C T C A G
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGGCCACTCG-
-MRSCACTYAA
 G T C A A T C G C A T G G A T C T A G C T C G A T G A C C G A T A T G C T C A G A C G T
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGCCACTCG
TRAGGTCA----
 A C G T A C G T G T C A A T C G C A T G G A T C T A G C T C G A T G A C C G A T A T G C T C A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T