Information for 15-CTGTCCGTAACC (Motif 21)

A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C G T C T G A C T G A A G T C A G T C
Reverse Opposite:
A C T G A C T G A G C T A G C T G T C A G T A C A C T G A C T G C G T A A G T C C G T A C T A G
p-value:1e-9
log p-value:-2.235e+01
Information Content per bp:1.898
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.5 +/- 72.5bp
Average Position of motif in Background107.8 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTGTCCGTAACC-
-TGACCTTGACCT
 A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C G T C T G A C T G A A G T C A G T C A C G T
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGTCCGTAACC-
-TGACCTTGACCT
 A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C G T C T G A C T G A A G T C A G T C A C G T
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGTCCGTAACC-
CTGTCTGTCACCT
 A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C G T C T G A C T G A A G T C A G T C A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Nr5a2/MA0505.1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCGTAACC--
GCTGACCTTGAACTN
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C G T C T G A C T G A A G T C A G T C A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCCGTAACC-
TGACCTCTCNNTGACCT
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C G T C T G A C T G A A G T C A G T C A C G T
G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T

PAX5/MA0014.3/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTGTCCGTAACC--
--GAGCGTGACCCC
 A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C G T C T G A C T G A A G T C A G T C A C G T A C G T
A C G T A C G T T C A G C T G A T A C G A G T C T C A G G C A T T A C G C T G A T A G C A G T C G T A C A G T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGTCCGTAACC-
-TGTCTGDCACCT
 A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C G T C T G A C T G A A G T C A G T C A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PBX2/MA1113.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCGTAACC
NCTGTCAATCAN-
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C G T C T G A C T G A A G T C A G T C
A T G C T A G C G A C T T C A G G A C T T G A C G T C A T G C A G A C T G T A C G C T A A G T C A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTGTCCGTAACC
GSCTGTCACTCA--
 A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C G T C T G A C T G A A G T C A G T C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTGTCCGTAACC
NCTGTCAATCAN-
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C A C T G A C G T C T G A C T G A A G T C A G T C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T