Information for 17-CGTGTGTTAAGT (Motif 22)

A G T C A T C G A C G T A C T G A C G T A T C G A C G T C G A T C G T A C G T A C T A G A C G T
Reverse Opposite:
C G T A A G T C A C G T A C G T C G T A C G T A A T G C C G T A A G T C C G T A A T G C C T A G
p-value:1e-8
log p-value:-1.882e+01
Information Content per bp:1.896
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets110.0 +/- 58.6bp
Average Position of motif in Background25.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:CGTGTGTTAAGT---
------TTAAGTGGN
 A G T C A T C G A C G T A C T G A C G T A T C G A C G T C G A T C G T A C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CGTGTGTTAAGT---
------TTAAGTGGT
 A G T C A T C G A C G T A C T G A C G T A T C G A C G T C G A T C G T A C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:CGTGTGTTAAGT--
------TTAAGTGC
 A G T C A T C G A C G T A C T G A C G T A T C G A C G T C G A T C G T A C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGTGTGTTAAGT
-AGGTGTTAAT-
 A G T C A T C G A C G T A C T G A C G T A T C G A C G T C G A T C G T A C G T A C T A G A C G T
A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGTGTGTTAAGT
AAGGTGTKAA--
 A G T C A T C G A C G T A C T G A C G T A T C G A C G T C G A T C G T A C G T A C T A G A C G T
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CGTGTGTTAAGT-------
--NTNNTTAAGTGGNTNAN
 A G T C A T C G A C G T A C T G A C G T A T C G A C G T C G A T C G T A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

MTF1/MA0863.1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CGTGTGTTAAGT
GTGCCGTGTGCAAA--
 A C G T A C G T A C G T A C G T A G T C A T C G A C G T A C T G A C G T A T C G A C G T C G A T C G T A C G T A C T A G A C G T
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CGTGTGTTAAGT-------
--NTNNTTAAGTGGTTANN
 A G T C A T C G A C G T A C T G A C G T A T C G A C G T C G A T C G T A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CGTGTGTTAAGT--
NCNTTTGTTATTTNN
 A C G T A G T C A T C G A C G T A C T G A C G T A T C G A C G T C G A T C G T A C G T A C T A G A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PB0044.1_Mtf1_1/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CGTGTGTTAAGT
GGGCCGTGTGCAAAAA
 A C G T A C G T A C G T A C G T A G T C A T C G A C G T A C T G A C G T A T C G A C G T C G A T C G T A C G T A C T A G A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T