Information for 17-KTATGWAGGT (Motif 28)

A C T G A C G T C G T A A C G T A T C G C G A T C G T A A C T G C T A G C G A T
Reverse Opposite:
C G T A A G T C A G T C A C G T C G T A A T G C C G T A A C G T C G T A G T A C
p-value:1e-6
log p-value:-1.418e+01
Information Content per bp:1.850
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets104.9 +/- 42.9bp
Average Position of motif in Background123.6 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-KTATGWAGGT---
TATAAGTAGGTCAA
 A C G T A C T G A C G T C G T A A C G T A T C G C G A T C G T A A C T G C T A G C G A T A C G T A C G T A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORC/MA1151.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:KTATGWAGGT--
ATAAGTAGGTCA
 A C T G A C G T C G T A A C G T A T C G C G A T C G T A A C T G C T A G C G A T A C G T A C G T
C T G A C G A T G C T A C G T A A C T G A C G T T C G A C A T G C T A G A C G T A G T C C T G A

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:KTATGWAGGT--
--ATCAAGGTCA
 A C T G A C G T C G T A A C G T A T C G C G A T C G T A A C T G C T A G C G A T A C G T A C G T
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

POU5F1B/MA0792.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:KTATGWAGGT
-TATGCAAAT
 A C T G A C G T C G T A A C G T A T C G C G A T C G T A A C T G C T A G C G A T
A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-KTATGWAGGT-
AATATGCAAATT
 A C G T A C T G A C G T C G T A A C G T A T C G C G A T C G T A A C T G C T A G C G A T A C G T
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

POU3F4/MA0789.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:KTATGWAGGT
-TATGCAAAT
 A C T G A C G T C G T A A C G T A T C G C G A T C G T A A C T G C T A G C G A T
A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

POU3F1/MA0786.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:KTATGWAGGT--
TTATGCAAATTA
 A C T G A C G T C G T A A C G T A T C G C G A T C G T A A C T G C T A G C G A T A C G T A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

PB0159.1_Rfx4_2/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---KTATGWAGGT--
NNNGTAACTANGNNA
 A C G T A C G T A C G T A C T G A C G T C G T A A C G T A T C G C G A T C G T A A C T G C T A G C G A T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:KTATGWAGGT-
-TATGCAAATC
 A C T G A C G T C G T A A C G T A T C G C G A T C G T A A C T G C T A G C G A T A C G T
A C G T G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:KTATGWAGGT--
--AAYTAGGTCA
 A C T G A C G T C G T A A C G T A T C G C G A T C G T A A C T G C T A G C G A T A C G T A C G T
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A